TitleA System for Information Management in BioMedical Studies -SIMBioMS.
Publication TypeJournal Article
Year of Publication2009
AuthorsKrestyaninova M, Zarins A, Viksna J, Kurbatova N, Rucevskis P, Neogi S G, Gostev M, Perheentupa T, Knuuttila J, Barrett A, Lappalainen I, Rung J, Podnieks K, Sarkans U, McCarthy MI, Brazma A
JournalBioinformatics
Volume25
Pagination2768-9
Date Published7
ISSN1367-4811
KeywordsComputational Biology, Database Management Systems, Databases, Factual, Information Management, Information Storage and Retrieval, non-u.s. gov't, research support, Software
AbstractSUMMARY: SIMBioMS is a web based open source software system for managing data and information in biomedical studies. It provides a solution for the collection, storage, management and retrieval of information about research subjects and biomedical samples, as well as experimental data obtained using a range of high throughput technologies, including gene expression, genotyping, proteomics and metabonomics. The system can easily be customised and has proven to be successful in several large scale multi-site collaborative projects. It is compatible with emerging functional genomics data standards and provides data import and export in accepted standard formats. Protocols for transferring data to durable archives at the European Bioinformatics Institute have been implemented. AVAILABILITY: The source code, documentation, and initialization scripts are available at http://simbioms.org. CONTACT: support\@simbioms.org.
DOI10.1093/bioinformatics/btp420