Genoman

A library for accessing and manipulating genome annotation data

Contact Pär Engström: engstrom at ebi.ac.uk

Implementation Documentation Download
Perl Reference Genoman.tar.gz
  Installation  

HTqPCR

Analysis of high-throughput quantitative real-time PCR data

Contact Heidi Dvinge: heidi at ebi.ac.uk

Implementation

Documentation

Download

R (Mac OS X 10.5) Manual HTqPCR_1.13.0_OSX_10.5.tgz
  Reference  
  Installation  
R (Mac OS X 10.4) Manual HTqPCR_1.1.4_OSX_10.4.tgz
  Reference  
  Installation  
R (Windows 32- and 64-bit) Manual HTqPCR_1.13.0_Win.zip
  Reference  
  Installation  
R (Windows 32-bit only) Manual HTqPCR_1.5.2_Win32.zip
  Reference  
  Installation  
R (package source) Manual HTqPCR_1.13.0.tar.gz
  Reference  
  Installation  

PeakAnalyzer

Automated peak splitting and functional annotation

Contact Mali Salmon-Divon: mali at ebi.ac.uk

Implementation

Documentation

Download

Java (source and jar files) Installation and usage PeakAnalyzer_1.4.tar.gz
  Sample data  

PeakAnnotator

Functional annotation of binding and modification loci

Contact Mali Salmon-Divon: mali at ebi.ac.uk

Implementation

Documentation

Download

Java (source and jar files) Installation and usage PeakAnnotator_Java_1.4.tar.gz
  Sample data  
C++ (source and binaries) Installation and usage PeakAnnotator_Cpp_1.4.tar.gz
  Sample data  

PeakSplitter

Subdivision of ChIP-seq/ChIP-chip regions into discrete signal peaks

Contact Mali Salmon-Divon: mali at ebi.ac.uk

Implementation

Documentation

Download

Java (source and jar files) Installation and usage PeakSplitter_Java_1.0.tar.gz
  Sample data  
C++ (source and binaries) Installation and usage PeakSplitter_Cpp_1.0.tar.gz
  Sample data