Genoman
A library for accessing and manipulating genome annotation data
Contact Pär Engström: engstrom at ebi.ac.uk
| Implementation | Documentation | Download |
| Perl | Reference | Genoman.tar.gz |
| Installation |
HTqPCR
Analysis of high-throughput quantitative real-time PCR data
Contact Heidi Dvinge: heidi at ebi.ac.uk
|
Implementation |
Documentation |
Download |
| R (Mac OS X 10.5) | Manual | HTqPCR_1.13.0_OSX_10.5.tgz |
| Reference | ||
| Installation | ||
| R (Mac OS X 10.4) | Manual | HTqPCR_1.1.4_OSX_10.4.tgz |
| Reference | ||
| Installation | ||
| R (Windows 32- and 64-bit) | Manual | HTqPCR_1.13.0_Win.zip |
| Reference | ||
| Installation | ||
| R (Windows 32-bit only) | Manual | HTqPCR_1.5.2_Win32.zip |
| Reference | ||
| Installation | ||
| R (package source) | Manual | HTqPCR_1.13.0.tar.gz |
| Reference | ||
| Installation |
PeakAnalyzer
Automated peak splitting and functional annotation
Contact Mali Salmon-Divon: mali at ebi.ac.uk
|
Implementation |
Documentation |
Download |
| Java (source and jar files) | Installation and usage | PeakAnalyzer_1.4.tar.gz |
| Sample data |
PeakAnnotator
Functional annotation of binding and modification loci
Contact Mali Salmon-Divon: mali at ebi.ac.uk
|
Implementation |
Documentation |
Download |
| Java (source and jar files) | Installation and usage | PeakAnnotator_Java_1.4.tar.gz |
| Sample data | ||
| C++ (source and binaries) | Installation and usage | PeakAnnotator_Cpp_1.4.tar.gz |
| Sample data |
PeakSplitter
Subdivision of ChIP-seq/ChIP-chip regions into discrete signal peaks
Contact Mali Salmon-Divon: mali at ebi.ac.uk
|
Implementation |
Documentation |
Download |
| Java (source and jar files) | Installation and usage | PeakSplitter_Java_1.0.tar.gz |
| Sample data | ||
| C++ (source and binaries) | Installation and usage | PeakSplitter_Cpp_1.0.tar.gz |
| Sample data | |