Gene Expression Atlas

The Functional Genomics Production Team are pleased to announce the beta publication of gene expression data from the Gene Expression Atlas as RDF Linked Open Data. The Expression Atlas Linked Dataset is an alternative API to the Gene Expression Atlas data. The purpose of this API is to enable richer queries over the data, it also supports federated queries over other linked datasets, including ChEMBL, Reactome, BioModels, BioSample, Uniprot, BioPortal and Bio2RDF.

The primary interface to the Expression Atlas RDF data is via the SPARQL endpoint.

Contact

If you are interested in this work, please sign up to our EFO user mailing list where we will announce updates.

If you have questions or would like more information, you can email Simon Jupp jupp [at] ebi.ac.uk and James Malone malone [at] ebi.ac.uk directly.

Atlas RDF Related Links