Gene Expression Atlas

This dataset is a beta publication of gene expression data from the Gene Expression Atlas as RDF Linked Open Data. The Expression Atlas Linked Dataset is an alternative API to the Gene Expression Atlas data. The purpose of this API is to enable richer queries over the data, it also supports federated queries over other linked datasets, including ChEMBL, Reactome, BioModels, BioSample, Uniprot, BioPortal and Bio2RDF.

The primary interface to the Expression Atlas RDF data is via the SPARQL endpoint.

Please note: this dataset represents an older form of the Gene Expression Atlas from 2013, prior to its restructuring into the Baseline Atlas and Differential Atlas. An RDF version of the new format is planned however.


If you are interested in this work, please sign up to our EFO user mailing list where we will announce updates.

If you have questions or would like more information, you can email Simon Jupp jupp [at] directly.

Atlas RDF Related Links