BioModels documentation

Documentation for the BioModels Linked Dataset

BioModels linked data set contains all curated and non curated SBML models in the BioModels repository in RDF. Each SBML element is captured as a RDF class. The parent-child relationships between the elements and the attributes are captured using RDF properties. An additional property is introduced to capture the curated and non-curated status of each model. The diagrams below show a detailed diagramatic representation of the schema. 

Namespace prefixes

Top level class structure

 image 

Top level property structure

image

Common properties

Common properties
SBMLModel

SBMLModel
FunctionDef

FunctionDef
UnitsDef

UnitsDef
Compartment

Compartment
Species

Species
Parameter

Parameter
Initial Assignment

Initial Assignment
Rule

Rule
Constraint

Constraint

Reaction

reaction


Event

Event