What is PRIDE?
The PRIDE PRoteomics IDEntifications (PRIDE) database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence. PRIDE is a core member in the ProteomeXchange (PX) consortium, which provides a single point for submitting mass spectrometry based proteomics data to public-domain repositories. Datasets are submitted to PRIDE via ProteomeXchange and are handled by expert biocurators.
Publications / how to cite
- Citing PRIDE generally: Vizcaino JA, Cote RG, Csordas A, Dianes JA, Fabregat A, Foster JM, Griss J, Alpi E, Birim M, Contell J, O'Kelly G, Schoenegger A, Ovelleiro D, Perez-Riverol Y, Reisinger F, Rios D, Wang R, Hermjakob H. The Proteomics Identifications (PRIDE) database and associated tools: status in 2013. Nucleic Acids Res. 2013 Jan 1;41(D1):D1063-9. doi: 10.1093/nar/gks1262. Epub 2012 Nov 29. PubMed PMID:23203882.
- Citing a PX identifier for a dataset:
Complete: The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium (http://proteomecentral.proteomexchange.org) via the PRIDE partner repository  with the dataset identifier PXD000000 and DOI 10.6019/PXD000000.
Partial: The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium (http://proteomecentral.proteomexchange.org) via the PRIDE partner repository  with the dataset identifier PXD000000.
 Vizcaino JA, et al. The Proteomics Identifications (PRIDE) database and associated tools: status in 2013. Nucleic Acids Res. 2013 Jan 1;41(D1):D1063-9.
- Citing PRIDE Inspector: Wang R, Fabregat A, Rios D, Ovelleiro D, Foster JM, Cote RG, Griss J, Csordas A, Perez-Riverol Y, Reisinger F, Hermjakob H, Martens L, Vizcaino JA. PRIDE Inspector: a tool to visualize and validate MS proteomics data. Nat Biotechnol. 2012 Feb 8;30(2):135-7. PubMed PMID: 22318026
- Citing PRIDE Converter 2: Côté RG, Griss J, Dianes JA, Wang R, Wright JC, van den Toorn HWP, van Breukelen B, Heck AJR, Hulstaert N, Martens L, Reisinger F, Csordas A, Ovelleiro D, Perez-Riverol Y, Barsnes H, Hermjakob H, Vizcaíno JA (2012). The Proteomics IDEntifications (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium. Mol Cell Proteomics 11:1682-1689. PubMed PMID: 23203882
Please also check out the publications page from the PRIDE team for a more comprehensive list of peer-reviewed papers and posters/oral presentations at international conferences.
The team behind PRIDE
The PRIDE team would like to thank all data submitters for their contributions. The PRIDE team is funded at present by the Wellcome Trust [grant number WT085949MA], the EU FP7 grants ‘ProteomeXchange’ [grant number 260558], and ‘PRIME-XS’ [grant number 262067] and EMBL core funding.
In the recent past PRIDE has also been funded by the EU grant ‘LipidomicNet’ [grant number 202272], and the BBSRC grant ‘PRIDE Converter’ [reference BB/I024204/1].
The PRIDE team would like to thank the following companies for their support through the offering of free software licenses:
|Developed with IntelliJ IDEA.|
|Profiled with YourKit Java Profiler.|
|Consulted with Matrix Science.|