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Chr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. MCF7 Cell line.


The Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To do this study four human cell lines were selected, MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the MCF7 cell line. 6 laboratories contributed to compile all the reported data.

Sample Processing Protocol

See details in reference PMID : 24138474

Data Processing Protocol

See details in reference PMID : 24138474


J. Alberto Medina-Aunon, Proteomics - Bioinformatics

Submission Date


Publication Date



    Segura V, Medina-Aunon JA, Mora MI, Martínez-Bartolomé S, Abian J, Aloria K, Antúnez O, Arizmendi JM, Azkargorta M, Barceló-Batllori S, Beaskoetxea J, Bech-Serra JJ, Blanco F, Monteiro MB, Cáceres D, Canals F, Carrascal M, Casal JI, Clemente F, Colomé N, Dasilva N, Díaz P, Elortza F, Fernández-Puente P, Fuentes M, Gallardo O, Gharbi SI, Gil C, González-Tejedo C, Hernáez ML, Lombardía M, Lopez-Lucendo M, Marcilla M, Mato JM, Mendes M, Oliveira E, Orera I, Pascual-Montano A, Prieto G, Ruiz-Romero C, Sánchez Del Pino MM, Tabas-Madrid D, Valero ML, Vialas V, Villanueva J, Albar JP, Corrales FJ; Surfing Transcriptomic Landscapes. A Step beyond the Annotation of Chromosome 16 Proteome., J Proteome Res, 2013 Nov 5, PubMed(s) : 24138474


Showing 1 - 8 of 8 results
# Accession Title Proteins Peptides Unique Peptides Spectra Identified Spectra View in Reactome
1 31011 SPHPP_VHIO_MCF7_QTOF_GEL_curated_FDR1_protein 5754 79387 12935 317960 38949
2 31012 SPHPP_VHIO_MCF7_QTOF_RP_curated_FDR1_protein 2145 45749 4395 132588 22298
3 31013 SPHPP_PCB_SG_MCF7_curated_FDR1_protein 6409 115731 15330 227309 54185
4 31014 SPHPP_CIC_MCF7_OT_GEL_NewS_FDR_1protein_curated 4751 36284 8624 97365 17179
5 31015 SPHPP_CIB_MCF7_ProteinGrouping_curated_FDR1_protein 4712 84878 10445 311828 42554
6 31016 SPHPP_CNB_MCF7_TT_GEL_R1_PG_curated_FDR1prot 7773 109552 22175 452970 54033
7 31017 SPHPP_CNB_MCF7_TT_RPB_R1_PG_curated_FDR1prot 6011 45259 11628 468831 21786
8 31018 SPHPP_IIBB_MCF7_OT_OGEL_MASCOT_curated_FDR1_protein 2826 29639 4271 34487 12751