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Summary

Title

Chr16-HPP.Pilot experiment.JPR HPP Special issue

Description

"The Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To characterize the proteome of Chr16, three cell lines were selected, MCF7 breast cancer human epithelial cells, CCD18 human colon fibroblasts, and Jurkat human T lymphocytes. "

Sample Processing Protocol

See details in reference PMID : 23234512

Data Processing Protocol

See details in reference PMID : 23234512

Contact

J. Alberto Medina-Aunon, Proteomics - Bioinformatics

Submission Date

01/10/2012

Quantification

Not available

Experiment Type

Bottom-up proteomics

Assay count

40

Publication

    Segura V, Medina-Aunon JA, Guruceaga E, Gharbi SI, González-Tejedo C, Sánchez del Pino MM, Canals F, Fuentes M, Casal JI, Martínez-Bartolomé S, Elortza F, Mato JM, Arizmendi JM, Abian J, Oliveira E, Gil C, Vivanco F, Blanco F, Albar JP, Corrales FJ; Spanish human proteome project: dissection of chromosome 16., J Proteome Res, 2013 Jan 4, 12, 1, 112-22, PubMed(s) : 23234512

Assay

Accession Title Protein Count Peptide Count Unique Peptide Count Spectrum Count Identified Spectrum Count
27330 SHPP_UV_CCD18_5600_MiapeCompliance 1012 15887 5301 82983 10881
27331 SHPP_UV_CCD18_5600_MiapeCompliance 1329 25574 7477 104212 16274
27332 SHPP_UV_CCD18_5600_MiapeCompliance 1284 22121 7051 105338 15408
27333 SHPP_UV_CCD18_5600_MiapeCompliance 1213 22573 6183 103698 15401
27334 SHPP_UV_CCD18_5600_MiapeCompliance 1288 18888 5660 104373 13313
27335 SHPP_UV_CCD18_5600_MiapeCompliance 1276 26676 5483 105638 16503
27336 SHPP_UV_CCD18_5600_MiapeCompliance 1253 28577 6088 102465 16682
27337 SHPP_UV_CCD18_5600_MiapeCompliance 1112 17802 3785 100621 11359
27338 SHPP_UV_CCD18_5600_MiapeCompliance 1224 17593 4081 102367 11686
27339 SHPP_UV_CCD18_5600_MiapeCompliance 1306 18077 4524 104507 12733
27340 SHPP_UV_CCD18_5600_MiapeCompliance 1334 17234 4690 101268 12729
27341 SHPP_UV_CCD18_5600_MiapeCompliance 1273 15629 4274 101934 11685
27342 SHPP_UV_CCD18_5600_MiapeCompliance 1222 16413 3784 98806 11169
27343 SHPP_UV_CCD18_5600_MiapeCompliance 1074 15304 3147 87783 9795
27344 SHPP_UV_CCD18_5600_MiapeCompliance 1115 11480 3250 90164 8510
27345 SHPP_CNB_MCF7_5600_MiapeCompliance 1302 4678 2200 25044 4120
27346 SHPP_CNB_MCF7_5600_MiapeCompliance 1148 3558 1761 16176 3169
27347 SHPP_CNB_MCF7_5600_MiapeCompliance 1204 3935 1953 18071 3471
27348 SHPP_CNB_MCF7_5600_MiapeCompliance 1391 5236 2689 28601 4599
27349 SHPP_CNB_MCF7_5600_MiapeCompliance 1375 5238 2651 31277 4476
27350 SHPP_CNB_MCF7_5600_MiapeCompliance 1485 6070 3140 38586 5237
27351 SHPP_CNB_MCF7_5600_MiapeCompliance 1438 5717 2986 39986 5007
27352 SHPP_CNB_MCF7_5600_MiapeCompliance 1471 5705 3108 43195 5099
27353 SHPP_CNB_MCF7_5600_MiapeCompliance 1457 5624 2908 42916 4866
27354 SHPP_CNB_MCF7_5600_MiapeCompliance 1337 5055 2534 39543 4359
27355 SHPP_CNB_MCF7_5600_MiapeCompliance 1298 4998 2400 36711 4520
27356 SHPP_CNB_MCF7_5600_MiapeCompliance 1227 4360 2154 33395 3981
27357 SHPP_CNB_MCF7_5600_MiapeCompliance 1126 3843 1852 29967 3444
27358 SHPP_CNB_MCF7_5600_MiapeCompliance 1030 3443 1695 30297 3099
27359 SHPP_CNB_MCF7_5600_MiapeCompliance 830 2724 1391 15066 2426
27360 SHPP_CNB_Jurkat_5600_MiapeCompliance 3594 22899 9072 76290 18711
27361 SHPP_CNB_Jurkat_5600_MiapeCompliance 3538 21039 8530 70408 17099
27362 SHPP_CNB_Jurkat_5600_MiapeCompliance 3370 20493 8021 74279 16624
27363 SHPP_CNB_Jurkat_5600_MiapeCompliance 3243 19375 7523 73234 15899
27364 SHPP_CNB_Jurkat_5600_MiapeCompliance 3305 20212 7725 70020 16309
27365 SHPP_CNB_Jurkat_5600_MiapeCompliance 3343 19686 7903 73290 16238
27366 SHPP_CNB_Jurkat_5600_MiapeCompliance 3427 21468 8307 75177 17004
27367 SHPP_CNB_Jurkat_5600_MiapeCompliance 3061 18648 7143 65004 14893
27368 SHPP_CNB_Jurkat_5600_MiapeCompliance 3354 21758 8042 74248 17101
27369 SHPP_CNB_Jurkat_5600_MiapeCompliance 3424 22328 8487 75538 17837

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