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Summary

Title

Chr16-HPP.Pilot experiment.JPR HPP Special issue

Description

"The Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To characterize the proteome of Chr16, three cell lines were selected, MCF7 breast cancer human epithelial cells, CCD18 human colon fibroblasts, and Jurkat human T lymphocytes. "

Sample Processing Protocol

See details in reference PMID : 23234512

Data Processing Protocol

See details in reference PMID : 23234512

Contact

J. Alberto Medina-Aunon, Proteomics - Bioinformatics

Submission Date

01/10/2012

Publication Date

11/01/2013

Quantification

Not available

Experiment Type

Bottom-up proteomics

Assay count

40

Publication

    Segura V, Medina-Aunon JA, Guruceaga E, Gharbi SI, González-Tejedo C, Sánchez del Pino MM, Canals F, Fuentes M, Casal JI, Martínez-Bartolomé S, Elortza F, Mato JM, Arizmendi JM, Abian J, Oliveira E, Gil C, Vivanco F, Blanco F, Albar JP, Corrales FJ; Spanish human proteome project: dissection of chromosome 16., J Proteome Res, 2013 Jan 4, 12, 1, 112-22, PubMed: 23234512

Assay

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Showing 1 - 10 of 40 results
# Accession Title Proteins Peptides Unique Peptides Spectra Identified Spectra View in Reactome
1 27330 SHPP_UV_CCD18_5600_MiapeCompliance 1012 15887 5301 82983 10881
2 27331 SHPP_UV_CCD18_5600_MiapeCompliance 1329 25574 7477 104212 16274
3 27332 SHPP_UV_CCD18_5600_MiapeCompliance 1284 22121 7051 105338 15408
4 27333 SHPP_UV_CCD18_5600_MiapeCompliance 1213 22573 6183 103698 15401
5 27334 SHPP_UV_CCD18_5600_MiapeCompliance 1288 18888 5660 104373 13313
6 27335 SHPP_UV_CCD18_5600_MiapeCompliance 1276 26676 5483 105638 16503
7 27336 SHPP_UV_CCD18_5600_MiapeCompliance 1253 28577 6088 102465 16682
8 27337 SHPP_UV_CCD18_5600_MiapeCompliance 1112 17802 3785 100621 11359
9 27338 SHPP_UV_CCD18_5600_MiapeCompliance 1224 17593 4081 102367 11686
10 27339 SHPP_UV_CCD18_5600_MiapeCompliance 1306 18077 4524 104507 12733