Project : PRD000053

View in PRIDE Inspector
Download Project Files

Summary

Title

Projects of the Clinical Proteomics Laboratories at the Medical University of Vienna (CPL/MUW)

Description

Not available

Sample Processing Protocol

See details in reference PMID : 19678649

Data Processing Protocol

See details in reference PMID : 19678649

Contact

Christopher Gerner, Department of Medicine I

Submission Date

01/05/2008

Publication

    Slany A, Haudek VJ, Zwickl H, Gundacker NC, Grusch M, Weiss TS, Seir K, Rodgarkia-Dara C, Hellerbrand C, Gerner C; Cell characterization by proteome profiling applied to primary hepatocytes and hepatocyte cell lines Hep-G2 and Hep-3B., J Proteome Res, 2010 Jan, 9, 1, 6-21, PubMed(s) : 19678649

Assay

Accession Title Protein Count Peptide Count Unique Peptide Count Spectrum Count Identified Spectrum Count
8906 Human T lymphocyte, untreated, cytoplasmic fraction 606 2205 2074 2205 2205
8907 Human T lymphocyte, untreated, cytoplasmic fraction 358 1312 1238 1312 1312
8908 Human T lymphocyte, untreated, cytoplasmic fraction 642 2113 2024 2113 2113
3718 Human blood vessel endothelial cells, untreated, cytoplasmic fraction 886 3305 3113 3305 3305
3719 Human blood vessel endothelial cells, untreated, cytoplasmic fraction 760 3028 2735 3028 3028
3720 Human blood vessel endothelial cells, untreated, cytoplasmic fraction 1192 4595 4175 4595 4595
3721 Human blood vessel endothelial cells, untreated, cytoplasmic fraction 728 2462 2217 2462 2462
8909 Human blood vessel endothelial cells, untreated, cytoplasmic fraction 820 3661 3439 3661 3661
8910 Human blood vessel endothelial cells, untreated, secreted protein fraction 322 1097 1032 1097 1097
8911 Human blood vessel endothelial cells, untreated, secreted protein fraction 129 353 331 353 353
8912 Human blood vessel endothelial cells, untreated, secreted protein fraction 202 809 749 809 809
8913 Human blood vessel endothelial cells, untreated, secreted protein fraction 242 811 758 811 811
8914 Human blood vessel endothelial cells, untreated, secreted protein fraction 226 894 854 894 894
8915 Human blood vessel endothelial cells, treated with IL1beta, cytoplasmic fraction 1110 4152 3778 4152 4152
8916 Human blood vessel endothelial cells, treated with IL1beta, cytoplasmic fraction 979 3988 3633 3988 3988
8917 Human blood vessel endothelial cells, treated with IL1beta, secreted protein fraction 225 566 529 566 566
8918 Human blood vessel endothelial cells, treated with IL1beta, secreted protein fraction 452 1590 1496 1590 1590
8919 Human blood vessel endothelial cells, treated with IL1beta, secreted protein fraction 321 1063 1001 1063 1063
8920 Human blood vessel endothelial cells, treated with IL1beta, secreted protein fraction 246 906 861 906 906
8921 Human blood vessel endothelial cells, treated with vegf, cytoplasmic fraction 975 3107 2838 3107 3107
8922 Human blood vessel endothelial cells, treated with vegf, cytoplasmic fraction 830 2430 2156 2430 2430
8923 Human blood vessel endothelial cells, treated with vegf, cytoplasmic fraction 845 2580 2297 2580 2580
8924 Human blood vessel endothelial cells, treated with vegf, cytoplasmic fraction 1079 4480 4057 4480 4480
8925 Human blood vessel endothelial cells, treated with vegf, secreted protein fraction 402 1567 1483 1567 1567
8926 Human blood vessel endothelial cells, treated with vegf, secreted protein fraction 339 1206 1139 1206 1206
8927 Human blood vessel endothelial cells, treated with vegf, secreted protein fraction 304 1009 948 1009 1009
8928 Human blood vessel endothelial cells, treated with vegf, secreted protein fraction 230 705 656 705 705
8929 Human blood vessel endothelial cells, treated with vegf, secreted protein fraction 234 629 583 629 629
8930 Human blood vessel endothelial cells, treated with IL1beta, cytoplasmic fraction 744 2575 2244 2575 2575
8931 Human skin fibroblasts, untreated, secreted protein fraction 91 248 244 248 248
8932 Human skin fibroblasts, untreated, secreted protein fraction 13 27 27 27 27
8933 Human multiple myeloma-associated fibroblasts, untreated, secreted protein fraction 113 377 370 377 377
8934 Human multiple myeloma-associated fibroblasts, untreated, secreted protein fraction 79 363 362 363 363
8935 Human M24 melanoma cells, untreated, cytoplasmic protein fraction 953 3725 3519 3725 3725
8936 Mouse transplanted human M24 melanoma cells, untreated, cytoplasmic protein fraction 801 2699 2501 2699 2699
8937 Mouse transplanted human M24 melanoma cells, untreated, cytoplasmic protein fraction 760 2346 2145 2346 2346
8938 Mouse transplanted human M24 melanoma cells, untreated, secreted protein fraction 292 1046 976 1046 1046
8939 Mouse transplanted human M24 melanoma cells, untreated, secreted protein fraction 198 713 654 713 713
8940 Human primary melanocytes, untreated, secreted protein fraction 120 238 230 238 238
8941 Human primary melanocytes, untreated, secreted protein fraction 116 233 225 233 233
8942 Primary mouse melanoma-associated fibroblasts, untreated, cytoplasmic fraction 531 1625 1454 1624 1624
3592 Proteome profile of human Jurkat cells, a human T-cell leukemia cell line. 573 1840 1769 1840 1840
3593 Proteome profile of human Jurkat cells, a T-cell leukemia cell line. 644 2741 2591 2741 2741
3594 Proteome profile of human Jurkat cells, a T-cell leukemia cell line. 700 2720 2639 2720 2720
3844 Human peripheral blood mononuclear cells, cancer patient, cytoplasmic fraction 629 2444 2298 2444 2444
3845 Human peripheral blood mononuclear cells, cancer patient, cytoplasmic fraction 485 2133 2015 2133 2133
3846 Human peripheral blood mononuclear cells, cancer patient, cytoplasmic fraction 474 1895 1765 1895 1895
3847 Human peripheral blood mononuclear cells, cancer patient, cytoplasmic fraction 322 1454 1350 1454 1454
3848 Human peripheral blood mononuclear cells, untreated, cytoplasmic fraction 606 2472 2329 2472 2472
3849 Human peripheral blood mononuclear cells, untreated, cytoplasmic fraction 881 3508 3331 3508 3508
3850 Human peripheral blood mononuclear cells, untreated, cytoplasmic fraction 637 2453 2310 2453 2453
3851 Human peripheral blood mononuclear cells, untreated, cytoplasmic fraction 793 3323 3152 3323 3323
3852 Human peripheral blood mononuclear cells, healthy control, cytoplasmic fraction 383 1692 1616 1692 1692
3853 Human peripheral blood mononuclear cells, healthy control, cytoplasmic fraction 619 2397 2281 2397 2397
3854 Human peripheral blood mononuclear cells, healthy control, cytoplasmic fraction 383 1001 967 1001 1001
3855 Human peripheral blood mononuclear cells, healthy control, cytoplasmic fraction 715 2814 2689 2814 2814
3856 Human peripheral blood mononuclear cells, treated with hydrogen peroxide, cytoplasmic fraction 531 2258 2123 2258 2258
3857 Human peripheral blood mononuclear cells, treated with hydrogen peroxide, cytoplasmic fraction 224 730 707 730 730
3858 Human peripheral blood mononuclear cells, treated with hydrogen peroxide, cytoplasmic fraction 690 2436 2304 2436 2436
3859 Human peripheral blood mononuclear cells, treated with hydrogen peroxide, cytoplasmic fraction 515 1944 1859 1944 1944
3860 Human skin fibroblasts, untreated, cytoplasmic fraction 948 4353 4029 4353 4353
3861 Human skin fibroblasts, untreated, cytoplasmic fraction 731 3258 2949 3258 3258
3862 Human skin fibroblasts, untreated, cytoplasmic fraction 897 3668 3403 3668 3668
3863 Immortal human skin keratinocytes, untreated, cytoplasmic fraction 959 3730 3510 3730 3730
3864 Immortal human skin keratinocytes, untreated, cytoplasmic fraction 913 3333 3192 3333 3333
3865 Immortal human skin keratinocytes, untreated, cytoplasmic fraction 977 3939 3730 3939 3939
7956 Rat hepatocytes, untreated, cytoplasmic fraction 315 1403 1306 1403 1403
7957 Rat Kupffer cells, untreated, cytoplasmic fraction 541 2407 2224 2407 2407
7958 Rat Kupffer cells, treated with LPS, cytoplasmic fraction 534 2488 2302 2488 2488
7959 Rat Kupffer cells, treated in vivo with NNM, cytoplasmic fraction 605 2479 2299 2479 2479
7960 Rat Kupffer cells, animal treated in vivo with NNM, cell supernatant 129 304 298 304 304
7961 Rat liver homogenate, control, cytoplasmic fraction 507 2361 2238 2361 2361
7964 Human melanoma cell line M24, untreated, cytoplasmic fraction 953 3715 3509 3715 3715
7965 Human melanoma cell line M24, untreated, cytoplasmic fraction 1021 3579 3393 3579 3579
7966 Human melanoma cell line M24, untreated, cytoplasmic fraction 626 2128 2033 2128 2128
7967 Human melanoma cell line M24, treated with M8, cytoplasmic fraction 1092 4374 4072 4374 4374
7968 Human melanoma cell line M24, treated with M8, cytoplasmic fraction 813 2970 2754 2970 2970
7969 Human melanoma cell line M24, treated with M8, cytoplasmic fraction 473 1765 1677 1765 1765
3381 Human dendritic cells, immature, cytoplasmic fraction 665 2592 2334 2592 2592
3382 Human dendritic cells, immature, cytoplasmic fraction 982 3446 3160 3446 3446
3383 Human dendritic cells, immature, cytoplasmic fraction 611 2021 1873 2021 2021
3384 Human dendritic cells, immature, cytoplasmic fraction 1078 4032 3772 4032 4032
8858 Human dendritic cells, immature, secreted protein fraction 62 174 145 174 174
8859 Human dendritic cells, immature, secreted protein fraction 396 1422 1348 1422 1422
8860 Human dendritic cells, immature, secreted protein fraction 75 190 178 190 190
8861 Human dendritic cells, immature, secreted protein fraction 259 956 895 956 956
8862 Human dendritic cells, treated with human rhinovirus, cytoplasmic fraction 601 2139 1946 2139 2139
8863 Human dendritic cells, treated with human rhinovirus, cytoplasmic fraction 897 2908 2670 2908 2908
8864 Human dendritic cells, treated with human rhinovirus, cytoplasmic protein fraction 1019 3423 3228 3423 3423
8865 Human dendritic cells, treated with rhinovirus, secreted protein fraction 78 197 168 197 197
8866 Human dendritic cells, treated with human rhinovirus, secreted protein fraction 140 451 413 451 451
8867 Human dendritic cells, treated with human rhinovirus, secreted protein fraction 36 85 73 85 85
8868 Human dendritic cells, treated with human rhinovirus, secreted protein fraction 222 718 678 718 718
8869 Human dendritic cells, mature, cytoplasmic fraction 601 2139 1946 2139 2139
8870 Human dendritic cells, mature, cytoplasmic fraction 1050 3523 3228 3523 3523
8871 Human dendritic cells, mature, cytoplasmic fraction 679 2218 1978 2218 2218
8872 Human dendritic cells, mature, cytoplasmic protein fraction 1059 3855 3601 3855 3855
8873 Human dendritic cells, mature, secreted protein fraction 97 253 230 253 253
8874 Human dendritic cells, mature, secreted protein fraction 341 1271 1206 1271 1271
8875 Human dendritic cells, mature, secreted protein fraction 175 454 431 454 454
8876 Human dendritic cells, mature, secreted protein fraction 219 686 653 686 686
8877 Human dendritic cells, treated with oxidized phospholipids, cytoplasmic fraction 717 2599 2399 2599 2599
8878 Human dendritic cells, treated with oxidized phospholipids, cytoplasmic fraction 963 3254 2989 3254 3254
8879 Human dendritic cells, treated with oxidized phospholipids, cytoplasmic fraction 994 3596 3343 3596 3596
8880 Human dendritic cells, treated with oxidized phospholipids, secreted protein fraction 94 269 242 269 269
8881 Human dendritic cells, treated with oxidized phospholipids, secreted protein fraction 371 1229 1173 1229 1229
8882 Human dendritic cells, treated with oxidized phospholipids, secreted protein fraction 140 393 364 393 393
8883 Human dendritic cells, treated with oxidized phospholipids, secreted protein fraction 239 787 733 787 787
8884 Human erythocytes, untreated, cytoplasmic fraction 104 319 311 319 319
8885 Human erythrocyte, untreated, cytoplasmic fraction 113 468 447 468 468
8886 Human erythrocyte, untreated, cytoplasmic fraction 111 469 458 469 469
8887 Human monocytes, untreated, cytoplasmic fraction 588 1944 1803 1944 1944
8888 Human monocytes, untreated, cytoplasmic fraction 592 2179 2065 2179 2179
8889 Human monocytes, untreated, cytoplasmic fraction 599 2377 2231 2377 2377
8890 Human monocytes, untreated, cytoplasmic fraction 523 1718 1613 1718 1718
8891 Human neutrophils, untreated, cytoplasmic fraction 493 2178 2091 2178 2178
8892 Human neutrophils, untreated, cytoplasmic fraction 556 2470 2331 2470 2470
8893 Human neutrophils, untreated, cytoplasmic fraction 556 2470 2331 2470 2470
8894 Human white blood cells, untreated, cytoplasmic fraction 711 2576 2270 2576 2576
8895 Human platelet, untreated, cytoplasmic fraction 253 1111 1051 1111 1111
8896 Human platelet, untreated, cytoplasmic fraction 376 1664 1561 1664 1664
8897 Human platelet, untreated, cytoplasmic fraction 343 1569 1468 1569 1569
8898 Human platelet, untreated, cytoplasmic fraction 315 1337 1273 1337 1337
8899 Human platelet, untreated, cytoplasmic fraction 368 1474 1379 1474 1474
8900 Human platelet, untreated, cytoplasmic fraction 377 1526 1448 1526 1526
8901 Human plasma, untreated 153 1059 987 1059 1059
8902 Human plasma, untreated 63 466 449 466 466
8903 Human plasma, untreated 154 850 797 850 850
8904 Human plasma, untreated, 155 867 811 867 867
8905 Human T lymphocytes, untreated, cytoplasmic fraction 594 2167 2034 2167 2167
8943 Primary mouse melanoma-associated fibroblasts, untreated, cytoplasmic fraction 691 2227 2032 2227 2227
8944 Primary mouse melanoma-associated fibroblasts, untreated, cytoplasmic fraction 292 1046 976 1046 1046
8945 Primary mouse melanoma-associated fibroblasts, untreated, cytoplasmic fraction 198 713 654 713 713
8946 Human M24 melanoma cells, untreated, cytoplasmic protein fraction 1021 3579 3393 3579 3579
8947 Human primary melanocytes, untreated, cytoplasmic fraction 748 2552 2371 2552 2552
8948 Human primary melanocytes, untreated, cytoplasmic fraction 678 2721 2459 2721 2721
8959 Human Hep3B cells, untreated, cytoplasmic fraction 966 4275 3849 4275 4275
8960 Human Hep3B cells, untreated, cytoplasmic fraction 1054 4802 4394 4802 4802
8961 Human Hep3B cells, untreated, secreted protein fraction 44 139 132 139 139
8962 Human Hep3B cells, untreated, secreted protein fraction 116 409 375 409 409
8963 Human HepG2, untreated, cytoplasmic fraction 978 3799 3652 3799 3799
8964 Human HepG2, untreated, cytoplasmic fraction 819 3007 2913 3007 3007
8965 Human HepG2, untreated, cytoplasmic fraction 1034 4403 4072 4403 4403
8966 Human HepG2, untreated, cytoplasmic fraction 900 3325 3205 3325 3325
8967 Human HepG2, untreated, secreted protein fraction 227 787 746 787 787
8968 Human HepG2, untreated, secreted protein fraction 106 348 332 348 348
8969 Human HepG2, untreated, secreted protein fraction 130 758 729 758 758
8970 Human HepG2, untreated, secreted protein fraction 390 1407 1349 1407 1407
8971 Primary human hepatocytes, untreated, cytoplasmic fraction 569 2472 2368 2472 2472
8972 Primary human hepatocytes, untreated, cytoplasmic fraction 533 2460 2339 2460 2460
8973 Primary human hepatocytes, untreated, cytoplasmic fraction 638 2690 2523 2690 2690
8974 Primary human hepatocytes, untreated, cytoplasmic fraction 693 2757 2584 2757 2757

You are about to run PRIDE Inspector via Java Web Start. Double click on the JNLP file downloaded if it didn't start automatically.

Note: Due to Oracle's recent Java update, you may experience security related problems with Java Web Start. Please add "http://www.ebi.ac.uk" to the URLs listed in the Security tab of your Java Control Panel.