The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant,
public data repository for proteomics data. It has been developed to provide the
proteomics community with a public repository for protein and peptide identifications
together with the evidence supporting these identifications. PRIDE is also able to capture
details of post-translational modifications coordinated relative to the
peptides in which they have been found.
Search PRIDE
You can use the search box to perform simple keyword queries.
Allowed values for the simple search are:
PRIDE Experiment accession number (ex: 8500).
Protein accession: This will search the database and return the experiments where
this
protein was identified. You can use protein accessions from IPI, UniProtKB, ENSEMBL
or
RefSeq,
and
you can also use UniProtKB IDs and NCBI gi numbers.
For example:
UniProt accession: P29375
UniProt ID: KDM5A_HUMAN
IPI: IPI00619935
ENSEMBL: ENSP00000382688
RefSeq: NP_005047
NCBI gi: gi|435778 (please note that the gi| prefix is mandatory)
UniProtKB, ENSEMBL and RefSeq accessions be can versioned (e.g. IPI00619935.2)
to refine your search to a specific version.
The
Browse page provides
access to
datasets via their associated project
name or categorised using selected ontolgies. Categories include species, tissue,
cell type, GO terms and disease.
More complex searches can be performed using the
Advanced Search.
Please also consider using the
PRIDE BioMart for powerful sophisticated searches (also allows searches
across data resources, for example linking PRIDE identifications to
REACTOME pathways).
Download and view locally ALL private experiments in PRIDE
Get it from:
Download
or click the button below to run directly
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PRIDE core version:
2.8.11
PRIDE web version:
2.8.15
Submiting Data to PRIDE
PRIDE encourages and welcomes direct user submissions of protein and peptide identification data to be published
in peer-reviewed publications.
License
All software, available on this site, is under the
Apache License, version 2 ,
and all data under the
Creative Commons Attribution License.
This means that you are free to copy, distribute, display and make commercial use of all records
from the PRIDE database provided appropriate credit is given.
Publications
To cite PRIDE in your publication, please use the following citation:
Vizcaíno JA, Côté R, Reisinger F, Foster JM, Mueller M, Rameseder J, Hermjakob H, Martens L. A guide to the Proteomics Identifications Database proteomics data repository.
Proteomics. 2009 Sep;9(18):4276-83.
PMID: 19662629
A comprehensive list of publications can be found here
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