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PDBsum entry 6ut0

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protein ligands metals Protein-protein interface(s) links
Hydrolase/inhibitor PDB id
6ut0

 

 

 

 

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JSmol PyMol  
Contents
Protein chains
169 a.a.
Ligands
GDP ×4
M1X ×4
Metals
_MG ×4
Waters ×446
PDB id:
6ut0
Name: Hydrolase/inhibitor
Title: Identification of the clinical development candidate mrtx849, a covalent krasg12c inhibitor for the treatment of cancer
Structure: Gtpase kras. Chain: a, b, c, d. Synonym: k-ras 2,ki-ras,c-k-ras,c-ki-ras. Engineered: yes. Mutation: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: kras, kras2, rask2. Expressed in: escherichia coli. Expression_system_taxid: 562
Resolution:
1.94Å     R-factor:   0.175     R-free:   0.222
Authors: G.P.Vigers,D.J.Smith
Key ref: J.B.Fell et al. (2020). Identification of the Clinical Development Candidate MRTX849, a Covalent KRASG12C Inhibitor for the Treatment of Cancer. J Med Chem, 63, 6679-6693. PubMed id: 32250617 DOI: 10.1021/acs.jmedchem.9b02052
Date:
29-Oct-19     Release date:   22-Apr-20    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P01116  (RASK_HUMAN) -  GTPase KRas from Homo sapiens
Seq:
Struc:
189 a.a.
169 a.a.*
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 10 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: E.C.3.6.5.2  - small monomeric GTPase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: GTP + H2O = GDP + phosphate + H+
GTP
+ H2O
=
GDP
Bound ligand (Het Group name = GDP)
corresponds exactly
+ phosphate
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    reference    
 
 
DOI no: 10.1021/acs.jmedchem.9b02052 J Med Chem 63:6679-6693 (2020)
PubMed id: 32250617  
 
 
Identification of the Clinical Development Candidate MRTX849, a Covalent KRASG12C Inhibitor for the Treatment of Cancer.
J.B.Fell, J.P.Fischer, B.R.Baer, J.F.Blake, K.Bouhana, D.M.Briere, K.D.Brown, L.E.Burgess, A.C.Burns, M.R.Burkard, H.Chiang, M.J.Chicarelli, A.W.Cook, J.J.Gaudino, J.Hallin, L.Hanson, D.P.Hartley, E.J.Hicken, G.P.Hingorani, R.J.Hinklin, M.J.Mejia, P.Olson, J.N.Otten, S.P.Rhodes, M.E.Rodriguez, P.Savechenkov, D.J.Smith, N.Sudhakar, F.X.Sullivan, T.P.Tang, G.P.Vigers, L.Wollenberg, J.G.Christensen, M.A.Marx.
 
  ABSTRACT  
 
Capping off an era marred by drug development failures and punctuated by waning interest and presumed intractability toward direct targeting of KRAS, new technologies and strategies are aiding in the target's resurgence. As previously reported, the tetrahydropyridopyrimidines were identified as irreversible covalent inhibitors of KRASG12C that bind in the switch-II pocket of KRAS and make a covalent bond to cysteine 12. Using structure-based drug design in conjunction with a focused in vitro absorption, distribution, metabolism and excretion screening approach, analogues were synthesized to increase the potency and reduce metabolic liabilities of this series. The discovery of the clinical development candidate MRTX849 as a potent, selective covalent inhibitor of KRASG12C is described.
 

 

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