PDBsum entry 6hu6

RNA

PDB id: 6hu6

Contents

DNA/RNA

Ligands

NH4 ×3

Waters ×40

PDB id:

6hu6

Name:

RNA

Title:

Structure of arf1 RNA

Structure:

RNA (19-mer). Chain: a. Engineered: yes. RNA (19-mer). Chain: e. Engineered: yes. RNA (5'-r( Gp Ap Gp Up Gp Cp Cp Ap Gp A)-3'). Chain: b. Engineered: yes.

Source:

Synthetic: yes. Homo sapiens. Organism_taxid: 9606. Organism_taxid: 9606

Resolution:

1.90Å R-factor: 0.227 R-free: 0.249

Authors:

C.Emmerich,D.Lazzaretti,L.Bandholz-Cajamarca,F.Bono

Key ref:

D.Lazzaretti et al. (2018). The crystal structure of Staufen1 in complex with a physiological RNA sheds light on substrate selectivity. Life Sci Alliance, 1, e201800187. PubMed id: 30456389

Date:

05-Oct-18 Release date: 21-Nov-18

DNA/RNA chains

G-A-G-U-G-C-C-A-G-A-A-G-C-U-G-C-C-U-C 19 bases

G-A-G-G-C-A-G-U-U-U-C-U-G-G-U-A-C-U-C 19 bases

G-A-G-U-G-C-C-A-G-A 10 bases

C-U-G-G-U-A-C-U-C 9 bases

Life Sci Alliance 1:e201800187 (2018)

PubMed id: 30456389

The crystal structure of Staufen1 in complex with a physiological RNA sheds light on substrate selectivity.

D.Lazzaretti, L.Bandholz-Cajamarca, C.Emmerich, K.Schaaf, C.Basquin, U.Irion, F.Bono.

ABSTRACT

During mRNA localization, RNA-binding proteins interact with specific structured mRNA localization motifs. Although several such motifs have been identified, we have limited structural information on how these interact with RNA-binding proteins. Staufen proteins bind structured mRNA motifs through dsRNA-binding domains (dsRBD) and are involved in mRNA localization in Drosophila and mammals. We solved the structure of two dsRBDs of human Staufen1 in complex with a physiological dsRNA sequence. We identified interactions between the dsRBDs and the RNA sugar-phosphate backbone and direct contacts of conserved Staufen residues to RNA bases. Mutating residues mediating nonspecific backbone interactions only affected Staufen function in Drosophila when in vitro binding was severely reduced. Conversely, residues involved in base-directed interactions were required in vivo even when they minimally affected in vitro binding. Our work revealed that Staufen can read sequence features in the minor groove of dsRNA and suggests that these influence target selection in vivo.