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PDBsum entry 5bs7

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protein ligands Protein-protein interface(s) links
Transcription regulator PDB id
5bs7

 

 

 

 

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Contents
Protein chains
75 a.a.
69 a.a.
70 a.a.
22 a.a.
Ligands
SO4
Waters ×9
PDB id:
5bs7
Name: Transcription regulator
Title: Structure of histone h3/h4 in complex with spt2
Structure: Histone h3.2. Chain: a, b. Fragment: residues 26-136. Engineered: yes. Histone h4. Chain: c, d. Engineered: yes. Protein spt2 homolog. Chain: e, f.
Source: Xenopus laevis. African clawed frog. Organism_taxid: 8355. Expressed in: escherichia coli. Expression_system_taxid: 562. Homo sapiens. Human. Organism_taxid: 9606. Gene: spty2d1.
Resolution:
3.30Å     R-factor:   0.233     R-free:   0.290
Authors: S.Chen,D.J.Patel
Key ref: S.Chen et al. (2015). Structure-function studies of histone H3/H4 tetramer maintenance during transcription by chaperone Spt2. Genes Dev, 29, 1326-1340. PubMed id: 26109053 DOI: 10.1101/gad.261115.115
Date:
01-Jun-15     Release date:   08-Jul-15    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
P84233  (H32_XENLA) -  Histone H3.2 from Xenopus laevis
Seq:
Struc:
136 a.a.
75 a.a.
Protein chains
Pfam   ArchSchema ?
P62799  (H4_XENLA) -  Histone H4 from Xenopus laevis
Seq:
Struc:
103 a.a.
69 a.a.
Protein chain
Pfam   ArchSchema ?
Q68D10  (SPT2_HUMAN) -  Protein SPT2 homolog from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
685 a.a.
70 a.a.
Protein chain
Pfam   ArchSchema ?
Q68D10  (SPT2_HUMAN) -  Protein SPT2 homolog from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
685 a.a.
22 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 

 
DOI no: 10.1101/gad.261115.115 Genes Dev 29:1326-1340 (2015)
PubMed id: 26109053  
 
 
Structure-function studies of histone H3/H4 tetramer maintenance during transcription by chaperone Spt2.
S.Chen, A.Rufiange, H.Huang, K.R.Rajashankar, A.Nourani, D.J.Patel.
 
  ABSTRACT  
 
Cells use specific mechanisms such as histone chaperones to abrogate the inherent barrier that the nucleosome poses to transcribing polymerases. The current model postulates that nucleosomes can be transiently disrupted to accommodate passage of RNA polymerases and that histones H3 and H4 possess their own chaperones dedicated to the recovery of nucleosomes. Here, we determined the crystal structure of the conserved C terminus of human Suppressors of Ty insertions 2 (hSpt2C) chaperone bound to an H3/H4 tetramer. The structural studies demonstrate that hSpt2C is bound to the periphery of the H3/H4 tetramer, mimicking the trajectory of nucleosomal-bound DNA. These structural studies have been complemented with in vitro binding and in vivo functional studies on mutants that disrupt key intermolecular contacts involving two acidic patches and hydrophobic residues on Spt2C. We show that contacts between both human and yeast Spt2C with the H3/H4 tetramer are required for the suppression of H3/H4 exchange as measured by H3K56ac and new H3 deposition. These interactions are also crucial for the inhibition of spurious transcription from within coding regions. Together, our data indicate that Spt2 interacts with the periphery of the H3/H4 tetramer and promotes its recycling in the wake of RNA polymerase.
 

 

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