PDBsum entry 4z88

Rim-binding protein

PDB id: 4z88

Contents

Protein chains

65 a.a.

(+ 0 more) 70 a.a.

66 a.a.

12 a.a.

11 a.a.

14 a.a.

13 a.a.

Ligands

LEU-PRO-GLU-ILE-PRO

ARG-ARG-LYS-LEU-PRO-GLU-ILE-PRO

ARG-LYS-LEU-PRO-GLU-ILE-PRO

ARG-ARG-LYS-LEU-PRO

ARG-ARG-LYS-LEU-PRO-GLU-ILE ×2

PO4 ×11

Waters ×57

PDB id:

4z88

Name:

Rim-binding protein

Title:

Sh3-ii of drosophila rim-binding protein with aplip1 peptide

Structure:

Rim-binding protein, isoform f. Chain: a, b, c, d, e, f, g, h, i, j, k, l. Fragment: unp residues 1318-1382. Engineered: yes. Jnk-interacting protein 1. Chain: m, n, o, p, q, r, s, t, u, v, w, x. Fragment: unp residues 149-163. Synonym: jip-1,app-like-interacting protein 1,aplip1,protein eye developmental sp512.

Source:

Drosophila melanogaster. Fruit fly. Organism_taxid: 7227. Gene: rbp, dmel_cg43073. Expressed in: escherichia coli. Expression_system_taxid: 562. Synthetic: yes. Organism_taxid: 7227

Resolution:

2.09Å R-factor: 0.210 R-free: 0.236

Authors:

J.H.Driller,N.Holton,M.Siebert,M.A.Boehme,M.C.Wahl,S.J.Sigrist,B.Loll

Key ref:

M.Siebert et al. A high affine rim-Binding protein/aplip1 interaction prevents the formation of ectopic axonal active zones. To be published, . PubMed id: 26274777

Date:

08-Apr-15 Release date: 05-Aug-15

Protein chains

A0A0B4JDC9  (A0A0B4JDC9_DROME) -  RIM-binding protein, isoform F from Drosophila melanogaster

Seq: 1844 a.a.

Struc: 65 a.a.

Protein chains

A0A0B4JDC9  (A0A0B4JDC9_DROME) -  RIM-binding protein, isoform F from Drosophila melanogaster

Seq: 1844 a.a.

Struc: 70 a.a.*

Protein chain

A0A0B4JDC9  (A0A0B4JDC9_DROME) -  RIM-binding protein, isoform F from Drosophila melanogaster

Seq: 1844 a.a.

Struc: 66 a.a.*

Protein chain

Q9W0K0  (JIP1_DROME) -  JNK-interacting protein 1 from Drosophila melanogaster

Seq: 490 a.a.

Struc: 12 a.a.*

Protein chain

Q9W0K0  (JIP1_DROME) -  JNK-interacting protein 1 from Drosophila melanogaster

Seq: 490 a.a.

Struc: 11 a.a.*

Protein chains

Q9W0K0  (JIP1_DROME) -  JNK-interacting protein 1 from Drosophila melanogaster

Seq: 490 a.a.

Struc: 14 a.a.*

Protein chains

Q9W0K0  (JIP1_DROME) -  JNK-interacting protein 1 from Drosophila melanogaster

Seq: 490 a.a.

Struc: 13 a.a.*

* PDB and UniProt seqs differ at 11 residue positions (black crosses)