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PDBsum entry 4mkv

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protein ligands Protein-protein interface(s) links
Lyase PDB id
4mkv
Jmol
Contents
Protein chains
458 a.a.
123 a.a.
Ligands
RUB ×4
PO4 ×3
A8S
Waters ×1030
PDB id:
4mkv
Name: Lyase
Title: Structure of pisum sativum rubisco with aba
Structure: Ribulose bisphosphate carboxylase large chain. Chain: a, b, c, d. Fragment: unp residues 12-469. Synonym: rubisco large subunit, ribulose-1,5-bisphosphatE C oxygenase. Ribulose bisphosphate carboxylase small chain 3a, chloroplastic. Chain: s, t, u, v. Fragment: unp residues 58-180.
Source: Pisum sativum. Garden pea. Organism_taxid: 3888. Tissue: leaf. Tissue: leaf
Resolution:
2.15Å     R-factor:   0.164     R-free:   0.197
Authors: M.C.Loewen,P.C.Loewen,J.Switala
Key ref: M.C.Loewen et al. Structure of pisum sativum rubisco with aba. To be published, .
Date:
05-Sep-13     Release date:   16-Oct-13    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P04717  (RBL_PEA) -  Ribulose bisphosphate carboxylase large chain
Seq:
Struc:
475 a.a.
458 a.a.
Protein chains
Pfam   ArchSchema ?
P07689  (RBS3_PEA) -  Ribulose bisphosphate carboxylase small chain 3A, chloroplastic
Seq:
Struc:
180 a.a.
123 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 6 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: Chains A, B, C, D, S, T, U, V: E.C.4.1.1.39  - Ribulose-bisphosphate carboxylase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: 2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O
2 × 3-phospho-D-glycerate
+ 2 × H(+)
=
D-ribulose 1,5-bisphosphate
Bound ligand (Het Group name = RUB)
corresponds exactly
+ CO(2)
+ H(2)O
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     plastid   2 terms 
  Biological process     oxidation-reduction process   5 terms 
  Biochemical function     oxidoreductase activity     6 terms