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PDBsum entry 4g1k

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protein ligands metals Protein-protein interface(s) links
Isomerase PDB id
4g1k
Jmol
Contents
Protein chains
248 a.a.
Ligands
EDO ×11
ACT
Metals
_NA ×4
Waters ×550
PDB id:
4g1k
Name: Isomerase
Title: Crystal structure of triosephosphate isomerase from burkhold thailandensis
Structure: Triosephosphate isomerase. Chain: a, b, c, d. Synonym: tim, triose-phosphate isomerase. Engineered: yes
Source: Burkholderia thailandensis. Organism_taxid: 271848. Strain: e264. Gene: bth_i1058, tpia. Expressed in: escherichia coli. Expression_system_taxid: 562.
Resolution:
2.35Å     R-factor:   0.171     R-free:   0.202
Authors: Seattle Structural Genomics Center For Infectious Disease,Se Structural Genomics Center For Infectious Disease (Ssgcid)
Key ref: L.Baugh et al. (2013). Combining functional and structural genomics to sample the essential Burkholderia structome. PLoS One, 8, e53851. PubMed id: 23382856
Date:
10-Jul-12     Release date:   25-Jul-12    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q2SZN7  (Q2SZN7_BURTA) -  Triosephosphate isomerase
Seq:
Struc:
251 a.a.
248 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.5.3.1.1  - Triose-phosphate isomerase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: D-glyceraldehyde 3-phosphate = glycerone phosphate
D-glyceraldehyde 3-phosphate
Bound ligand (Het Group name = EDO)
matches with 40.00% similarity
= glycerone phosphate
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     cytoplasm   1 term 
  Biological process     metabolic process   4 terms 
  Biochemical function     catalytic activity     4 terms  

 

 
    Added reference    
 
 
PLoS One 8:e53851 (2013)
PubMed id: 23382856  
 
 
Combining functional and structural genomics to sample the essential Burkholderia structome.
L.Baugh, L.A.Gallagher, R.Patrapuvich, M.C.Clifton, A.S.Gardberg, T.E.Edwards, B.Armour, D.W.Begley, S.H.Dieterich, D.M.Dranow, J.Abendroth, J.W.Fairman, D.Fox, B.L.Staker, I.Phan, A.Gillespie, R.Choi, S.Nakazawa-Hewitt, M.T.Nguyen, A.Napuli, L.Barrett, G.W.Buchko, R.Stacy, P.J.Myler, L.J.Stewart, C.Manoil, W.C.Van Voorhis.
 
  ABSTRACT  
 
No abstract given.