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PDBsum entry 4elv

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protein dna_rna ligands metals links
Transferase/DNA PDB id
4elv
Jmol
Contents
Protein chain
539 a.a.
DNA/RNA
Ligands
0R7
GOL ×4
PGE
EDO ×2
Metals
_CA
_MG ×3
Waters ×323
PDB id:
4elv
Name: Transferase/DNA
Title: Snapshot of the large fragment of DNA polymerase i from ther aquaticus processing modified pyrimidines
Structure: DNA polymerase i, thermostable. Chain: a. Fragment: unp residues 293-832. Synonym: taq polymerase 1. Engineered: yes. DNA (5'-d( Gp Ap Cp Cp Ap Cp Gp Gp Cp Gp Cp (0R8) chain: b. Engineered: yes. Other_details: DNA primer.
Source: Thermus aquaticus. Organism_taxid: 271. Gene: pola, pol1. Expressed in: escherichia coli. Expression_system_taxid: 562. Synthetic: yes. Synthetic. Organism_taxid: 32630. Other_details: DNA synthesizer.
Resolution:
1.90Å     R-factor:   0.178     R-free:   0.216
Authors: A.Marx,K.Diederichs,S.Obeid
Key ref: S.Obeid et al. Snapshot of the large fragment of DNA polymerase I fr thermus aquaticus processing modified pyrimidines. To be published, .
Date:
11-Apr-12     Release date:   24-Apr-13    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P19821  (DPO1_THEAQ) -  DNA polymerase I, thermostable
Seq:
Struc:
 
Seq:
Struc:
832 a.a.
539 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.2.7.7.7  - DNA-directed Dna polymerase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
Deoxynucleoside triphosphate
Bound ligand (Het Group name = 0R7)
matches with 48.72% similarity
+ DNA(n)
= diphosphate
+ DNA(n+1)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Biological process     DNA repair   2 terms 
  Biochemical function     nucleoside binding     4 terms