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PDBsum entry 3zey

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protein Protein-protein interface(s) links
Ribosome PDB id
3zey
Jmol
Contents
Protein chains
219 a.a.
248 a.a.
187 a.a.
250 a.a.
192 a.a.
195 a.a.
187 a.a.
315 a.a.
42 a.a.
66 a.a.
204 a.a.
104 a.a.
160 a.a.
121 a.a.
141 a.a.
126 a.a.
134 a.a.
129 a.a.
148 a.a.
127 a.a.
153 a.a.
149 a.a.
224 a.a.
105 a.a.
81 a.a.
142 a.a.
131 a.a.
86 a.a.
101 a.a.
83 a.a.
206 a.a.
65 a.a.
68 a.a.
PDB id:
3zey
Name: Ribosome
Title: High-resolution cryo-electron microscopy structure of the tr brucei ribosome
Structure: 40s ribosomal protein s4, putative. Chain: 1. Synonym: ribosomal protein s4e. 40s ribosomal protein s3a, putative. Chain: 0. Synonym: ribosomal proteins s1e. 40s ribosomal protein s6. Chain: 3. Synonym: ribosomal protein s6e.
Source: Trypanosoma brucei brucei. Organism_taxid: 999953. Strain: 927/4 gutat10.1. Strain: 927/4 gutat10.1
Authors: Y.Hashem,A.Des Georges,J.Fu,S.N.Buss,F.Jossinet,A.Jobe,Q.Zha H.Y.Liao,R.A.Grassucci,C.Bajaj,E.Westhof,S.Madison-Antenucc J.Frank
Key ref: Y.Hashem et al. (2013). High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome. Nature, 494, 385-389. PubMed id: 23395961 DOI: 10.1038/nature11872
Date:
09-Dec-12     Release date:   13-Feb-13    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q38BK6  (Q38BK6_TRYB2) -  40S ribosomal protein S3a
Seq:
Struc:
256 a.a.
219 a.a.
Protein chain
Pfam   ArchSchema ?
Q386F2  (Q386F2_TRYB2) -  40S ribosomal protein S4, putative
Seq:
Struc:
273 a.a.
248 a.a.
Protein chain
Pfam   ArchSchema ?
Q385D9  (Q385D9_TRYB2) -  40S ribosomal protein S5, putative
Seq:
Struc:
190 a.a.
187 a.a.
Protein chain
Pfam   ArchSchema ?
Q38CL9  (Q38CL9_TRYB2) -  40S ribosomal protein S6
Seq:
Struc:
250 a.a.
250 a.a.
Protein chain
Pfam   ArchSchema ?
Q38FD9  (Q38FD9_TRYB2) -  Ribosomal protein S7, putative
Seq:
Struc:
202 a.a.
192 a.a.
Protein chain
Pfam   ArchSchema ?
Q57YL6  (Q57YL6_TRYB2) -  40S ribosomal protein S8
Seq:
Struc:
220 a.a.
195 a.a.
Protein chain
Pfam   ArchSchema ?
Q57VP3  (Q57VP3_TRYB2) -  40S ribosomal protein S9, putative
Seq:
Struc:
190 a.a.
187 a.a.
Protein chain
Pfam   ArchSchema ?
Q383E1  (Q383E1_TRYB2) -  Guanine nucleotide-binding protein beta subunit-like protein
Seq:
Struc:
318 a.a.
315 a.a.
Protein chain
Pfam  
M1E1E8  (M1E1E8_TRYB2) -  Ribosomal protein s29, putative
Seq:
Struc:
57 a.a.
42 a.a.
Protein chain
Pfam   ArchSchema ?
Q57WI3  (Q57WI3_TRYB2) -  Ubiquitin/ribosomal protein S27a, putative
Seq:
Struc:
153 a.a.
66 a.a.
Protein chain
Pfam   ArchSchema ?
Q383I8  (Q383I8_TRYB2) -  40S ribosomal protein SA
Seq:
Struc:
277 a.a.
204 a.a.
Protein chain
Pfam   ArchSchema ?
Q38B67  (Q38B67_TRYB2) -  40S ribosomal protein S10, putative
Seq:
Struc:
219 a.a.
104 a.a.
Protein chain
Pfam   ArchSchema ?
Q38CI4  (Q38CI4_TRYB2) -  40S ribosomal proteins S11, putative
Seq:
Struc:
174 a.a.
160 a.a.
Protein chain
Pfam   ArchSchema ?
Q385Y8  (Q385Y8_TRYB2) -  40S ribosomal protein S12
Seq:
Struc:
144 a.a.
121 a.a.
Protein chain
Pfam   ArchSchema ?
Q586C2  (Q586C2_TRYB2) -  40S ribosomal protein S13, putative
Seq:
Struc:
151 a.a.
141 a.a.
Protein chain
Pfam   ArchSchema ?
Q4FKG9  (Q4FKG9_TRYB2) -  40S ribosomal protein S14
Seq:
Struc:
144 a.a.
126 a.a.
Protein chain
Pfam   ArchSchema ?
Q57XN7  (Q57XN7_TRYB2) -  40S ribosomal protein S15, putative
Seq:
Struc:
152 a.a.
134 a.a.
Protein chain
Pfam   ArchSchema ?
Q580K6  (Q580K6_TRYB2) -  40S ribosomal protein S15a, putative
Seq:
Struc:
130 a.a.
129 a.a.
Protein chain
Pfam   ArchSchema ?
Q57VV0  (Q57VV0_TRYB2) -  40S ribosomal protein S16, putative
Seq:
Struc:
149 a.a.
148 a.a.
Protein chain
Pfam   ArchSchema ?
Q382Z8  (Q382Z8_TRYB2) -  40S ribosomal protein S17, putative
Seq:
Struc:
142 a.a.
127 a.a.
Protein chain
Pfam   ArchSchema ?
Q38B69  (Q38B69_TRYB2) -  40S ribosomal protein S18, putative
Seq:
Struc:
153 a.a.
153 a.a.
Protein chain
Pfam   ArchSchema ?
Q583K7  (Q583K7_TRYB2) -  Ribosomal protein S19, putative
Seq:
Struc:
167 a.a.
149 a.a.
Protein chain
Pfam   ArchSchema ?
Q388D3  (Q388D3_TRYB2) -  40S ribosomal protein S2, putative
Seq:
Struc:
266 a.a.
224 a.a.
Protein chain
Pfam  
M1E1E7  (M1E1E7_TRYB2) -  Ribosomal protein s20, putative
Seq:
Struc:
117 a.a.
105 a.a.
Protein chain
Pfam   ArchSchema ?
Q385B8  (Q385B8_TRYB2) -  40S ribosomal protein S21, putative
Seq:
Struc:
194 a.a.
81 a.a.
Protein chain
Pfam   ArchSchema ?
Q38CD1  (Q38CD1_TRYB2) -  40S ribosomal protein S23, putative
Seq:
Struc:
143 a.a.
142 a.a.
Protein chain
Pfam   ArchSchema ?
Q38AM9  (Q38AM9_TRYB2) -  40S ribosomal protein S24
Seq:
Struc:
137 a.a.
131 a.a.
Protein chain
Pfam   ArchSchema ?
Q57XX0  (Q57XX0_TRYB2) -  40S ribosomal protein S25, putative
Seq:
Struc:
113 a.a.
86 a.a.
Protein chain
Pfam   ArchSchema ?
Q384J9  (Q384J9_TRYB2) -  Ribosomal protein S26, putative
Seq:
Struc:
111 a.a.
101 a.a.
Protein chain
Pfam   ArchSchema ?
Q383V7  (Q383V7_TRYB2) -  40S ribosomal protein S27, putative
Seq:
Struc:
86 a.a.
83 a.a.
Protein chain
Pfam   ArchSchema ?
Q38EW1  (Q38EW1_TRYB2) -  40S ribosomal protein S3, putative
Seq:
Struc:
266 a.a.
206 a.a.
Protein chain
Pfam   ArchSchema ?
Q584U5  (Q584U5_TRYB2) -  40S ribosomal protein S30, putative
Seq:
Struc:
66 a.a.
65 a.a.
Protein chain
Pfam   ArchSchema ?
Q57U30  (Q57U30_TRYB2) -  40S ribosomal protein S33, putative
Seq:
Struc:
103 a.a.
68 a.a.
Key:    PfamA domain  PfamB domain  Secondary structure

 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     intracellular   6 terms 
  Biological process     translation   2 terms 
  Biochemical function     structural constituent of ribosome     5 terms  

 

 
DOI no: 10.1038/nature11872 Nature 494:385-389 (2013)
PubMed id: 23395961  
 
 
High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome.
Y.Hashem, A.des Georges, J.Fu, S.N.Buss, F.Jossinet, A.Jobe, Q.Zhang, H.Y.Liao, R.A.Grassucci, C.Bajaj, E.Westhof, S.Madison-Antenucci, J.Frank.
 
  ABSTRACT  
 
No abstract given.