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PDBsum entry 3uwd

Go to PDB code: 
protein ligands metals links
Transferase PDB id
3uwd
Jmol
Contents
Protein chain
392 a.a.
Ligands
BTB
UNL
Metals
_CL ×5
_MG
Waters ×335
PDB id:
3uwd
Name: Transferase
Title: Crystal structure of phosphoglycerate kinase from bacillus a
Structure: Phosphoglycerate kinase. Chain: a. Engineered: yes. Mutation: yes
Source: Bacillus anthracis. Anthrax,anthrax bacterium. Organism_taxid: 1392. Strain: sterne. Gene: bas4988, ba_5367, gbaa_5367, pgk. Expressed in: escherichia coli. Expression_system_taxid: 469008.
Resolution:
1.68Å     R-factor:   0.176     R-free:   0.213
Authors: H.Zheng,M.Chruszcz,P.Porebski,M.Kudritska,S.Grimshaw,A.Savch W.F.Anderson,W.Minor,Center For Structural Genomics Of Infe Diseases (Csgid)
Key ref: H.Zheng et al. (2012). Crystal structures of putative phosphoglycerate kinases from B. anthracis and C. jejuni. J Struct Funct Genomics, 13, 15-26. PubMed id: 22403005 DOI: 10.1007/s10969-012-9131-9
Date:
01-Dec-11     Release date:   11-Jan-12    
Supersedes: 3b2b
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q81X75  (PGK_BACAN) -  Phosphoglycerate kinase
Seq:
Struc:
394 a.a.
392 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Enzyme reactions 
   Enzyme class: E.C.2.7.2.3  - Phosphoglycerate kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

      Pathway:
Calvin Cycle (carbon fixation stages)
      Reaction: ATP + 3-phospho-D-glycerate = ADP + 3-phospho-D-glyceroyl phosphate
ATP
+
3-phospho-D-glycerate
Bound ligand (Het Group name = UNL)
matches with 46.15% similarity
= ADP
+ 3-phospho-D-glyceroyl phosphate
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     cytoplasm   1 term 
  Biological process     phosphorylation   2 terms 
  Biochemical function     nucleotide binding     5 terms  

 

 
    reference    
 
 
DOI no: 10.1007/s10969-012-9131-9 J Struct Funct Genomics 13:15-26 (2012)
PubMed id: 22403005  
 
 
Crystal structures of putative phosphoglycerate kinases from B. anthracis and C. jejuni.
H.Zheng, E.V.Filippova, K.L.Tkaczuk, P.Dworzynski, M.Chruszcz, P.J.Porebski, Z.Wawrzak, O.Onopriyenko, M.Kudritska, S.Grimshaw, A.Savchenko, W.F.Anderson, W.Minor.
 
  ABSTRACT  
 
No abstract given.