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PDBsum entry 3ryk

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protein ligands Protein-protein interface(s) links
Isomerase PDB id
3ryk
Jmol
Contents
Protein chains
175 a.a.
Ligands
POP
TYD
Waters ×275
PDB id:
3ryk
Name: Isomerase
Title: 1.63 angstrom resolution crystal structure of dtdp-4-dehydro 3,5-epimerase (rfbc) from bacillus anthracis str. Ames with ppi bound
Structure: Dtdp-4-dehydrorhamnose 3,5-epimerase. Chain: a, b. Engineered: yes
Source: Bacillus anthracis str. Ames. Anthrax,anthrax bacterium. Organism_taxid: 198094. Strain: bacillus anthracis str. Ames. Gene: bas1136, ba_1229, gbaa_1229, rfbc. Expressed in: escherichia coli. Expression_system_taxid: 469008.
Resolution:
1.63Å     R-factor:   0.125     R-free:   0.160
Authors: A.S.Halavaty,M.Kuhn,G.Minasov,L.Shuvalova,K.Kwon,W.F.Anderso For Structural Genomics Of Infectious Diseases (Csgid)
Key ref: A.S.Halavaty et al. 1.63 angstrom resolution crystal structure of dtdp-4-Dehydrorhamnose 3,5-Epimerase (rfbc) from baci anthracis str. Ames with tdp and ppi bound. To be published, .
Date:
11-May-11     Release date:   25-May-11    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q81TP1  (Q81TP1_BACAN) -  dTDP-4-dehydrorhamnose 3,5-epimerase
Seq:
Struc:
181 a.a.
175 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.5.1.3.13  - dTDP-4-dehydrorhamnose 3,5-epimerase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

      Pathway:
6-Deoxyhexose Biosynthesis
      Reaction: dTDP-4-dehydro-6-deoxy-alpha-D-glucose = dTDP-4-dehydro-beta-L-rhamnose
dTDP-4-dehydro-6-deoxy-alpha-D-glucose
Bound ligand (Het Group name = TYD)
matches with 71.43% similarity
= dTDP-4-dehydro-beta-L-rhamnose
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Biological process     lipopolysaccharide biosynthetic process   1 term 
  Biochemical function     isomerase activity     2 terms