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PDBsum entry 3ms0

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protein dna_rna metals Protein-protein interface(s) links
Ribosome PDB id
3ms0
Jmol
Contents
Protein chains
234 a.a. *
206 a.a. *
208 a.a. *
151 a.a. *
101 a.a. *
155 a.a. *
138 a.a. *
127 a.a. *
98 a.a. *
119 a.a. *
124 a.a. *
117 a.a. *
60 a.a. *
88 a.a. *
83 a.a. *
99 a.a. *
70 a.a. *
78 a.a. *
99 a.a. *
24 a.a. *
354 a.a. *
DNA/RNA
Metals
_ZN ×2
* Residue conservation analysis
PDB id:
3ms0
Name: Ribosome
Title: Recognition of the amber stop codon by release factor rf1. T 3ms0 contains 30s ribosomal subunit. The 50s ribosomal subu found in PDB entry 3mrz. Molecule a in the same asymmetric deposited as 3mr8 (30s) and 3ms1 (50s).
Structure: 16s rrna (1504-mer). Chain: a. 30s ribosomal protein s2. Chain: b. 30s ribosomal protein s3. Chain: c. 30s ribosomal protein s4. Chain: d. 30s ribosomal protein s5.
Source: Thermus thermophilus. Organism_taxid: 262724. Strain: hb27. Escherichia coli. Organism_taxid: 469008. Strain: bl21(de3).
Resolution:
3.62Å     R-factor:   0.260     R-free:   0.291
Authors: A.Korostelev,J.Zhu,H.Asahara,H.F.Noller
Key ref: A.Korostelev et al. (2010). Recognition of the amber uag stop codon by release fa rf1.. Embo j., 29, 2577. PubMed id: 20588254
Date:
29-Apr-10     Release date:   14-Jul-10    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P62662  (RS2_THET2) -  30S ribosomal protein S2
Seq:
Struc:
256 a.a.
234 a.a.
Protein chain
Pfam   ArchSchema ?
P62663  (RS3_THET2) -  30S ribosomal protein S3
Seq:
Struc:
239 a.a.
206 a.a.
Protein chain
Pfam   ArchSchema ?
P62664  (RS4_THET2) -  30S ribosomal protein S4
Seq:
Struc:
209 a.a.
208 a.a.
Protein chain
Pfam   ArchSchema ?
P62665  (RS5_THET2) -  30S ribosomal protein S5
Seq:
Struc:
162 a.a.
151 a.a.
Protein chain
Pfam   ArchSchema ?
P62666  (RS6_THET2) -  30S ribosomal protein S6
Seq:
Struc:
101 a.a.
101 a.a.
Protein chain
Pfam   ArchSchema ?
P62667  (RS7_THET2) -  30S ribosomal protein S7
Seq:
Struc:
156 a.a.
155 a.a.
Protein chain
Pfam   ArchSchema ?
P62668  (RS8_THET2) -  30S ribosomal protein S8
Seq:
Struc:
138 a.a.
138 a.a.
Protein chain
Pfam   ArchSchema ?
P62669  (RS9_THET2) -  30S ribosomal protein S9
Seq:
Struc:
128 a.a.
127 a.a.
Protein chain
Pfam   ArchSchema ?
P62653  (RS10_THET2) -  30S ribosomal protein S10
Seq:
Struc:
105 a.a.
98 a.a.
Protein chain
Pfam   ArchSchema ?
P62654  (RS11_THET2) -  30S ribosomal protein S11
Seq:
Struc:
129 a.a.
119 a.a.
Protein chain
Pfam   ArchSchema ?
P61941  (RS12_THET2) -  30S ribosomal protein S12
Seq:
Struc:
132 a.a.
124 a.a.
Protein chain
Pfam   ArchSchema ?
P62655  (RS13_THET2) -  30S ribosomal protein S13
Seq:
Struc:
126 a.a.
117 a.a.
Protein chain
Pfam   ArchSchema ?
P62656  (RS14Z_THET2) -  30S ribosomal protein S14 type Z
Seq:
Struc:
61 a.a.
60 a.a.
Protein chain
Pfam   ArchSchema ?
P62657  (RS15_THET2) -  30S ribosomal protein S15
Seq:
Struc:
89 a.a.
88 a.a.
Protein chain
Pfam   ArchSchema ?
P62238  (RS16_THET2) -  30S ribosomal protein S16
Seq:
Struc:
88 a.a.
83 a.a.
Protein chain
Pfam   ArchSchema ?
P62658  (RS17_THET2) -  30S ribosomal protein S17
Seq:
Struc:
105 a.a.
99 a.a.
Protein chain
Pfam   ArchSchema ?
P62659  (RS18_THET2) -  30S ribosomal protein S18
Seq:
Struc:
88 a.a.
70 a.a.
Protein chain
Pfam   ArchSchema ?
P62660  (RS19_THET2) -  30S ribosomal protein S19
Seq:
Struc:
93 a.a.
78 a.a.
Protein chain
Pfam   ArchSchema ?
P62661  (RS20_THET2) -  30S ribosomal protein S20
Seq:
Struc:
106 a.a.
99 a.a.
Protein chain
Pfam   ArchSchema ?
P62613  (RSHX_THET2) -  30S ribosomal protein Thx
Seq:
Struc:
27 a.a.
24 a.a.
Protein chain
Pfam   ArchSchema ?
Q72HB8  (RF1_THET2) -  Peptide chain release factor 1
Seq:
Struc:
354 a.a.
354 a.a.
Key:    PfamA domain  PfamB domain  Secondary structure  CATH domain

 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     intracellular   5 terms 
  Biological process     translation   2 terms 
  Biochemical function     structural constituent of ribosome     9 terms  

 

Literature references that cite this PDB file's key reference

  PubMed id Reference
21420300 B.P.Klaholz (2011).
Molecular recognition and catalysis in translation termination complexes.
  Trends Biochem Sci, 36, 282-292.  
21281690 K.Kipper, S.Sild, C.Hetényi, J.Remme, and A.Liiv (2011).
Pseudouridylation of 23S rRNA helix 69 promotes peptide release by release factor RF2 but not by release factor RF1.
  Biochimie, 93, 834-844.  
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