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PDBsum entry 3lov

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protein ligands links
Oxidoreductase PDB id
3lov
Jmol
Contents
Protein chain
451 a.a. *
Ligands
FAD
Waters ×308
* Residue conservation analysis
PDB id:
3lov
Name: Oxidoreductase
Title: Crystal structure of putative protoporphyrinogen oxidase (yp_001813199.1) from exiguobacterium sp. 255-15 at 2.06 a
Structure: Protoporphyrinogen oxidase. Chain: a. Engineered: yes
Source: Exiguobacterium sibiricum. Organism_taxid: 262543. Strain: dsm 17290 / jcm 13490 / 255-15. Gene: exig_0701. Expressed in: escherichia coli. Expression_system_taxid: 562.
Resolution:
2.06Å     R-factor:   0.199     R-free:   0.241
Authors: Joint Center For Structural Genomics (Jcsg)
Key ref: Joint center for structural genomics (jcsg) Crystal structure of putative protoporphyrinogen oxidase (yp_001813199.1) from exiguobacterium sp. 255-15 at 2.06 a resolution. To be published, .
Date:
04-Feb-10     Release date:   23-Feb-10    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
B1YKJ9  (B1YKJ9_EXIS2) -  Protoporphyrinogen oxidase (Precursor)
Seq:
Struc:
474 a.a.
451 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.1.3.3.4  - Protoporphyrinogen oxidase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

      Pathway:
Porphyrin Biosynthesis (later stages)
      Reaction: Protoporphyrinogen-IX + 3 O2 = protoporphyrin-IX + 3 H2O2
Protoporphyrinogen-IX
+ 3 × O(2)
= protoporphyrin-IX
+ 3 × H(2)O(2)
      Cofactor: FAD
FAD
Bound ligand (Het Group name = FAD) corresponds exactly
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Biological process     oxidation-reduction process   2 terms 
  Biochemical function     oxidoreductase activity     2 terms