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PDBsum entry 3k2o

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protein ligands metals Protein-protein interface(s) links
Oxidoreductase PDB id
3k2o
Jmol
Contents
Protein chains
335 a.a. *
Ligands
PO4 ×3
ACT ×2
GOL
Metals
_NI ×2
_NA ×2
_CL ×6
Waters ×673
* Residue conservation analysis
PDB id:
3k2o
Name: Oxidoreductase
Title: Structure of an oxygenase
Structure: Bifunctional arginine demethylase and lysyl-hydro jmjd6. Chain: a, b. Fragment: unp residues 2-335. Synonym: histone arginine demethylase jmjd6, peptide-lysine dioxygenase jmjd6, lysyl-hydroxylase jmjd6, jmjc domain-con protein 6, jumonji domain-containing protein 6, phosphatidy receptor, protein ptdsr. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: jmjd6, kiaa0585, ptdsr. Expressed in: escherichia coli. Expression_system_taxid: 562
Resolution:
1.75Å     R-factor:   0.194     R-free:   0.225
Authors: T.Krojer,M.A.Mcdonough,I.J.Clifton,M.Mantri,S.S.Ng,A.C.W.Pik D.S.Butler,C.J.Webby,G.Kochan,C.Bhatia,J.E.Bray,A.Chaikuad, O.Gileadi,F.Von Delft,J.Weigelt,C.H.Arrowsmith,C.Bountra, A.M.Edwards,C.J.Schofield,K.L.Kavanagh,U.Oppermann
Key ref: M.Mantri et al. (2010). Crystal Structure of the 2-Oxoglutarate- and Fe(II)-Dependent Lysyl Hydroxylase JMJD6. J Mol Biol, 401, 211-222. PubMed id: 20685276 DOI: 10.1016/j.jmb.2010.05.054
Date:
30-Sep-09     Release date:   03-Nov-09    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q6NYC1  (JMJD6_HUMAN) -  Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6
Seq:
Struc:
403 a.a.
335 a.a.
Key:    PfamA domain  PfamB domain  Secondary structure  CATH domain

 

 
DOI no: 10.1016/j.jmb.2010.05.054 J Mol Biol 401:211-222 (2010)
PubMed id: 20685276  
 
 
Crystal Structure of the 2-Oxoglutarate- and Fe(II)-Dependent Lysyl Hydroxylase JMJD6.
M.Mantri, T.Krojer, E.A.Bagg, C.A.Webby, D.S.Butler, G.Kochan, K.L.Kavanagh, U.Oppermann, M.A.McDonough, C.J.Schofield.
 
  ABSTRACT  
 
No abstract given.