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PDBsum entry 3jxy

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protein dna_rna links
Hydrolase/DNA PDB id
3jxy
Jmol
Contents
Protein chain
231 a.a. *
DNA/RNA
Waters ×525
* Residue conservation analysis
PDB id:
3jxy
Name: Hydrolase/DNA
Title: Bacillus cereus alkylpurine DNA glycosylase alkd bound to dn containing a gt mismatch
Structure: Alkylpurine DNA glycosylase alkd. Chain: a. Engineered: yes. DNA (5'-d( Cp Gp Gp Ap Cp Tp Gp Ap Cp Gp Gp G)-3' chain: b. Engineered: yes. DNA (5'-d( Cp Cp Cp Gp Tp Tp Ap Gp Tp Cp Cp G)-3' chain: c. Engineered: yes
Source: Bacillus cereus. Organism_taxid: 222523. Strain: atcc 10987. Gene: alkd, bc_4913. Expressed in: escherichia coli. Expression_system_taxid: 562. Synthetic: yes. Synthetic: yes
Resolution:
1.50Å     R-factor:   0.133     R-free:   0.173
Authors: E.H.Rubinson,B.F.Eichman
Key ref: E.H.Rubinson et al. (2010). An unprecedented nucleic acid capture mechanism for excision of DNA damage. Nature, 468, 406-411. PubMed id: 20927102
Date:
21-Sep-09     Release date:   22-Sep-10    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q816E8  (Q816E8_BACCR) -  Uncharacterized protein
Seq:
Struc:
237 a.a.
231 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 

 
Nature 468:406-411 (2010)
PubMed id: 20927102  
 
 
An unprecedented nucleic acid capture mechanism for excision of DNA damage.
E.H.Rubinson, A.S.Gowda, T.E.Spratt, B.Gold, B.F.Eichman.
 
  ABSTRACT  
 
No abstract given.

 

Literature references that cite this PDB file's key reference

  PubMed id Reference
22659876 C.Yi, B.Chen, B.Qi, W.Zhang, G.Jia, L.Zhang, C.J.Li, A.R.Dinner, C.G.Yang, and C.He (2012).
Duplex interrogation by a direct DNA repair protein in search of base damage.
  Nat Struct Mol Biol, 19, 671-676.
PDB codes: 3rzg 3rzh 3rzj 3rzk 3rzl 3rzm 3s57 3s5a
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.