PDBsum entry 3jxy

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protein dna_rna links
Hydrolase/DNA PDB id
Protein chain
231 a.a. *
Waters ×525
* Residue conservation analysis
PDB id:
Name: Hydrolase/DNA
Title: Bacillus cereus alkylpurine DNA glycosylase alkd bound to dn containing a gt mismatch
Structure: Alkylpurine DNA glycosylase alkd. Chain: a. Engineered: yes. DNA (5'-d( Cp Gp Gp Ap Cp Tp Gp Ap Cp Gp Gp G)-3' chain: b. Engineered: yes. DNA (5'-d( Cp Cp Cp Gp Tp Tp Ap Gp Tp Cp Cp G)-3' chain: c. Engineered: yes
Source: Bacillus cereus. Organism_taxid: 222523. Strain: atcc 10987. Gene: alkd, bc_4913. Expressed in: escherichia coli. Expression_system_taxid: 562. Synthetic: yes. Synthetic: yes
1.50Å     R-factor:   0.133     R-free:   0.173
Authors: E.H.Rubinson,B.F.Eichman
Key ref: E.H.Rubinson et al. (2010). An unprecedented nucleic acid capture mechanism for excision of DNA damage. Nature, 468, 406-411. PubMed id: 20927102
21-Sep-09     Release date:   22-Sep-10    
Go to PROCHECK summary

Protein chain
Pfam   ArchSchema ?
Q816E8  (Q816E8_BACCR) -  Uncharacterized protein
237 a.a.
231 a.a.
Key:    PfamA domain  Secondary structure  CATH domain


Nature 468:406-411 (2010)
PubMed id: 20927102  
An unprecedented nucleic acid capture mechanism for excision of DNA damage.
E.H.Rubinson, A.S.Gowda, T.E.Spratt, B.Gold, B.F.Eichman.
No abstract given.


Literature references that cite this PDB file's key reference

  PubMed id Reference
22659876 C.Yi, B.Chen, B.Qi, W.Zhang, G.Jia, L.Zhang, C.J.Li, A.R.Dinner, C.G.Yang, and C.He (2012).
Duplex interrogation by a direct DNA repair protein in search of base damage.
  Nat Struct Mol Biol, 19, 671-676.
PDB codes: 3rzg 3rzh 3rzj 3rzk 3rzl 3rzm 3s57 3s5a
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