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PDBsum entry 3j16

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protein dna_rna ligands metals Protein-protein interface(s) links
Ribosome PDB id
3j16
Jmol
Contents
Protein chains
386 a.a.
608 a.a.
191 a.a.
55 a.a.
199 a.a.
226 a.a.
138 a.a.
136 a.a.
134 a.a.
DNA/RNA
Ligands
ATP
SF4 ×2
Metals
_MG
Waters ×1
PDB id:
3j16
Name: Ribosome
Title: Models of ribosome-bound dom34p and rli1p and their ribosoma partners
Structure: Dom34p. Chain: a. Rli1p. Chain: b. 28s ribosomal RNA. Chain: j. 18s ribosomal RNA. Chain: k. P-site tRNA.
Source: Saccharomyces cerevisiae. Organism_taxid: 4932. Organism_taxid: 4932
Authors: T.Becker,S.Franckenberg,S.Wickles,C.J.Shoemaker,A.M.Anger,J. P.Armache,H.Sieber,C.Ungewickell,O.Berninghausen,I.Daberkow A.Karcher,M.Thomm,K.-P.Hopfner,R.Green,R.Beckmann
Key ref: T.Becker et al. (2012). Structural basis of highly conserved ribosome recycling in eukaryotes and archaea. Nature, 482, 501-506. PubMed id: 22358840
Date:
12-Dec-11     Release date:   22-Feb-12    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P33309  (DOM34_YEAST) -  Protein DOM34
Seq:
Struc:
386 a.a.
386 a.a.
Protein chain
Pfam   ArchSchema ?
Q03195  (RLI1_YEAST) -  Translation initiation factor RLI1
Seq:
Struc:
 
Seq:
Struc:
608 a.a.
608 a.a.
Protein chain
Pfam   ArchSchema ?
P05738  (RL9A_YEAST) -  60S ribosomal protein L9-A
Seq:
Struc:
191 a.a.
191 a.a.
Protein chain
Pfam   ArchSchema ?
P0CX33  (RS30A_YEAST) -  40S ribosomal protein S30-A
Seq:
Struc:
63 a.a.
55 a.a.
Protein chain
Pfam   ArchSchema ?
P05317  (RLA0_YEAST) -  60S acidic ribosomal protein P0
Seq:
Struc:
312 a.a.
199 a.a.
Protein chain
Pfam   ArchSchema ?
P0CX37  (RS6A_YEAST) -  40S ribosomal protein S6-A
Seq:
Struc:
236 a.a.
226 a.a.
Protein chain
Pfam   ArchSchema ?
P0CX53  (RL12A_YEAST) -  60S ribosomal protein L12-A
Seq:
Struc:
165 a.a.
138 a.a.
Protein chain
Pfam   ArchSchema ?
P0CX41  (RL23A_YEAST) -  60S ribosomal protein L23-A
Seq:
Struc:
137 a.a.
136 a.a.
Protein chain
Pfam   ArchSchema ?
P0CX31  (RS24A_YEAST) -  40S ribosomal protein S24-A
Seq:
Struc:
135 a.a.
134 a.a.
Key:    PfamA domain  Secondary structure

 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     cytoplasm   13 terms 
  Biological process     nuclear-transcribed mRNA catabolic process, no-go decay   28 terms 
  Biochemical function     protein binding     17 terms  

 

 
Nature 482:501-506 (2012)
PubMed id: 22358840  
 
 
Structural basis of highly conserved ribosome recycling in eukaryotes and archaea.
T.Becker, S.Franckenberg, S.Wickles, C.J.Shoemaker, A.M.Anger, J.P.Armache, H.Sieber, C.Ungewickell, O.Berninghausen, I.Daberkow, A.Karcher, M.Thomm, K.P.Hopfner, R.Green, R.Beckmann.
 
  ABSTRACT  
 
No abstract given.

 

Literature references that cite this PDB file's key reference

  PubMed id Reference
22664987 C.J.Shoemaker, and R.Green (2012).
Translation drives mRNA quality control.
  Nat Struct Mol Biol, 19, 594-601.  
23072885 M.Graille, and B.Séraphin (2012).
Surveillance pathways rescuing eukaryotic ribosomes lost in translation.
  Nat Rev Mol Cell Biol, 13, 727-735.  
23072888 S.Kervestin, and A.Jacobson (2012).
NMD: a multifaceted response to premature translational termination.
  Nat Rev Mol Cell Biol, 13, 700-712.  
22955931 S.Schütz, and V.G.Panse (2012).
Getting ready to commit: ribosomes rehearse translation.
  Nat Struct Mol Biol, 19, 861-862.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time.