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PDBsum entry 3j15

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protein ligands Protein-protein interface(s) links
Translation/transport protein PDB id
3j15
Jmol
Contents
Protein chains
357 a.a.
593 a.a.
Ligands
ADP ×2
SF4 ×2
PDB id:
3j15
Name: Translation/transport protein
Title: Model of ribosome-bound archaeal pelota and abce1
Structure: Protein pelota. Chain: a. Abc transporter atp-binding protein. Chain: b. Synonym: abce1
Source: Pyrococcus furiosus. Organism_taxid: 2261. Organism_taxid: 2261
Authors: T.Becker,S.Franckenberg,S.Wickles,C.J.Shoemaker,A.M.Anger,J. P.Armache,H.Sieber,C.Ungewickell,O.Berninghausen,I.Daberkow A.Karcher,M.Thomm,K.-P.Hopfner,R.Green,R.Beckmann
Key ref: T.Becker et al. (2012). Structural basis of highly conserved ribosome recycling in eukaryotes and archaea. Nature, 482, 501-506. PubMed id: 22358840
Date:
12-Dec-11     Release date:   22-Feb-12    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q5JIB9  (PELO_PYRKO) -  Protein pelota homolog
Seq:
Struc:
357 a.a.
357 a.a.*
Protein chain
Pfam   ArchSchema ?
Q9UZA4  (Q9UZA4_PYRAB) -  ABC transporter ATP-binding protein
Seq:
Struc:
 
Seq:
Struc:
593 a.a.
593 a.a.
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Enzyme reactions 
   Enzyme class: Chain A: E.C.3.1.-.-
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
 Gene Ontology (GO) functional annotation 
  GO annot!
  Biological process     nuclear-transcribed mRNA catabolic process, no-go decay   3 terms 
  Biochemical function     nucleotide binding     5 terms  

 

 
Nature 482:501-506 (2012)
PubMed id: 22358840  
 
 
Structural basis of highly conserved ribosome recycling in eukaryotes and archaea.
T.Becker, S.Franckenberg, S.Wickles, C.J.Shoemaker, A.M.Anger, J.P.Armache, H.Sieber, C.Ungewickell, O.Berninghausen, I.Daberkow, A.Karcher, M.Thomm, K.P.Hopfner, R.Green, R.Beckmann.
 
  ABSTRACT  
 
No abstract given.

 

Literature references that cite this PDB file's key reference

  PubMed id Reference
22664987 C.J.Shoemaker, and R.Green (2012).
Translation drives mRNA quality control.
  Nat Struct Mol Biol, 19, 594-601.  
23072885 M.Graille, and B.Séraphin (2012).
Surveillance pathways rescuing eukaryotic ribosomes lost in translation.
  Nat Rev Mol Cell Biol, 13, 727-735.  
23072888 S.Kervestin, and A.Jacobson (2012).
NMD: a multifaceted response to premature translational termination.
  Nat Rev Mol Cell Biol, 13, 700-712.  
22955931 S.Schütz, and V.G.Panse (2012).
Getting ready to commit: ribosomes rehearse translation.
  Nat Struct Mol Biol, 19, 861-862.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time.