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PDBsum entry 3j0k

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protein metals Protein-protein interface(s) links
Transferase/transcription PDB id
3j0k
Jmol
Contents
Protein chains
1426 a.a.
1112 a.a.
266 a.a.
177 a.a.
214 a.a.
84 a.a.
171 a.a.
133 a.a.
119 a.a.
65 a.a.
114 a.a.
46 a.a.
Metals
_ZN ×9
_MG
PDB id:
3j0k
Name: Transferase/transcription
Title: Orientation of RNA polymerase ii within the human vp16-media ii-tfiif assembly
Structure: DNA-directed RNA polymerase ii largest subunit. Chain: a. DNA-directed RNA polymerase ii 140 kda polypeptid chain: b. DNA-directed RNA polymerase ii 45 kda polypeptide chain: c. DNA-directed RNA polymerase ii 32 kda polypeptide chain: d. DNA-directed RNA polymerases i, ii, and iii 27 kd
Source: Homo sapiens. Human. Organism_taxid: 9606. Cell_line: hela. Organelle: nucleus. Organelle: nucleus
Authors: C.Bernecky,P.Grob,C.C.Ebmeier,E.Nogales,D.J.Taatjes
Key ref: C.Bernecky et al. (2011). Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly. PLoS Biol, 9, e1000603. PubMed id: 21468301
Date:
04-Oct-11     Release date:   19-Oct-11    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P04050  (RPB1_YEAST) -  DNA-directed RNA polymerase II subunit RPB1
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1733 a.a.
1426 a.a.
Protein chain
Pfam   ArchSchema ?
P08518  (RPB2_YEAST) -  DNA-directed RNA polymerase II subunit RPB2
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1224 a.a.
1112 a.a.
Protein chain
Pfam   ArchSchema ?
P16370  (RPB3_YEAST) -  DNA-directed RNA polymerase II subunit RPB3
Seq:
Struc:
318 a.a.
266 a.a.
Protein chain
Pfam   ArchSchema ?
P20433  (RPB4_YEAST) -  DNA-directed RNA polymerase II subunit RPB4
Seq:
Struc:
221 a.a.
177 a.a.
Protein chain
No UniProt id for this chain
Struc: 214 a.a.
Protein chain
No UniProt id for this chain
Struc: 84 a.a.
Protein chain
Pfam   ArchSchema ?
P34087  (RPB7_YEAST) -  DNA-directed RNA polymerase II subunit RPB7
Seq:
Struc:
171 a.a.
171 a.a.
Protein chain
Pfam   ArchSchema ?
P20436  (RPAB3_YEAST) -  DNA-directed RNA polymerases I, II, and III subunit RPABC3
Seq:
Struc:
146 a.a.
133 a.a.
Protein chain
Pfam   ArchSchema ?
P27999  (RPB9_YEAST) -  DNA-directed RNA polymerase II subunit RPB9
Seq:
Struc:
122 a.a.
119 a.a.
Protein chain
Pfam   ArchSchema ?
P22139  (RPAB5_YEAST) -  DNA-directed RNA polymerases I, II, and III subunit RPABC5
Seq:
Struc:
70 a.a.
65 a.a.
Protein chain
Pfam   ArchSchema ?
P38902  (RPB11_YEAST) -  DNA-directed RNA polymerase II subunit RPB11
Seq:
Struc:
120 a.a.
114 a.a.
Protein chain
No UniProt id for this chain
Struc: 46 a.a.
Key:    PfamA domain  Secondary structure

 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     cytoplasm   8 terms 
  Biological process     transcription, RNA-dependent   21 terms 
  Biochemical function     RNA polymerase II activity     20 terms  

 

 
PLoS Biol 9:e1000603 (2011)
PubMed id: 21468301  
 
 
Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly.
C.Bernecky, P.Grob, C.C.Ebmeier, E.Nogales, D.J.Taatjes.
 
  ABSTRACT  
 
No abstract given.