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PDBsum entry 3iyn

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protein Protein-protein interface(s) links
Virus PDB id
3iyn
Jmol
Contents
Protein chains
(+ 6 more) 915 a.a. *
455 a.a. *
284 a.a. *
176 a.a. *
128 a.a. *
91 a.a. *
86 a.a. *
84 a.a. *
* Residue conservation analysis
PDB id:
3iyn
Name: Virus
Title: 3.6-angstrom cryoem structure of human adenovirus type 5
Structure: Hexon protein. Chain: a, b, c, d, e, f, g, h, i, j, k, l. Synonym: late protein 2. Penton base protein. Chain: m. Synonym: virion component iii, penton base protein, piii. Peripentonal hexon-associated protein. Chain: n. Synonym: protein iiia.
Source: Human adenovirus 5. Hadv-5. Organism_taxid: 28285. Organism_taxid: 28285
Authors: H.Liu,L.Jin,S.B.S.Koh,I.Atanasov,S.Schein,L.Wu,Z.H.Zhou
Key ref: H.Liu et al. (2010). Atomic structure of human adenovirus by cryo-EM reveals interactions among protein networks. Science, 329, 1038-1043. PubMed id: 20798312
Date:
09-Mar-10     Release date:   08-Sep-10    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P04133  (HEX_ADE05) -  Hexon protein
Seq:
Struc:
 
Seq:
Struc:
952 a.a.
915 a.a.
Protein chain
Pfam   ArchSchema ?
P12538  (PEN3_ADE05) -  Penton protein
Seq:
Struc:
 
Seq:
Struc:
571 a.a.
455 a.a.
Protein chain
Pfam   ArchSchema ?
P12537  (HEX3_ADE05) -  Pre-capsid vertex protein
Seq:
Struc:
 
Seq:
Struc:
585 a.a.
284 a.a.
Protein chains
Pfam   ArchSchema ?
P24936  (HEX8_ADE05) -  Pre-hexon-linking protein
Seq:
Struc:
227 a.a.
176 a.a.
Protein chain
Pfam   ArchSchema ?
P03281  (HEX9_ADE05) -  Hexon-interlacing protein
Seq:
Struc:
140 a.a.
128 a.a.
Protein chain
Pfam   ArchSchema ?
P03281  (HEX9_ADE05) -  Hexon-interlacing protein
Seq:
Struc:
140 a.a.
91 a.a.
Protein chain
Pfam   ArchSchema ?
P03281  (HEX9_ADE05) -  Hexon-interlacing protein
Seq:
Struc:
140 a.a.
86 a.a.
Protein chain
Pfam   ArchSchema ?
P03281  (HEX9_ADE05) -  Hexon-interlacing protein
Seq:
Struc:
140 a.a.
84 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     virion   4 terms 
  Biological process     viral reproduction   8 terms 
  Biochemical function     structural molecule activity     2 terms  

 

 
Science 329:1038-1043 (2010)
PubMed id: 20798312  
 
 
Atomic structure of human adenovirus by cryo-EM reveals interactions among protein networks.
H.Liu, L.Jin, S.B.Koh, I.Atanasov, S.Schein, L.Wu, Z.H.Zhou.
 
  ABSTRACT  
 
No abstract given.

 

Literature references that cite this PDB file's key reference

  PubMed id Reference
23241927 X.Zhang, P.Ge, X.Yu, J.M.Brannan, G.Bi, Q.Zhang, S.Schein, and Z.H.Zhou (2013).
Cryo-EM structure of the mature dengue virus at 3.5-Å resolution.
  Nat Struct Mol Biol, 20, 105-110.
PDB codes: 3j27 3j2p
21220301 D.H.Chen, M.L.Baker, C.F.Hryc, F.DiMaio, J.Jakana, W.Wu, M.Dougherty, C.Haase-Pettingell, M.F.Schmid, W.Jiang, D.Baker, J.A.King, and W.Chiu (2011).
Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus.
  Proc Natl Acad Sci U S A, 108, 1355-1360.
PDB codes: 2xyy 2xyz
21366418 D.Henaff, S.Salinas, and E.J.Kremer (2011).
An adenovirus traffic update: from receptor engagement to the nuclear pore.
  Future Microbiol, 6, 179-192.  
  21480239 L.Chen, B.Hann, and L.Wu (2011).
Experimental models to study lymphatic and blood vascular metastasis.
  J Surg Oncol, 103, 475-483.  
21333526 N.Grigorieff, and S.C.Harrison (2011).
Near-atomic resolution reconstructions of icosahedral viruses from electron cryo-microscopy.
  Curr Opin Struct Biol, 21, 265-273.  
21536134 P.Chandramouli, R.Hernandez-Lopez, H.W.Wang, and A.E.Leschziner (2011).
Validation of the orthogonal tilt reconstruction method with a biological test sample.
  J Struct Biol, 175, 85-96.  
21483980 Z.Li, T.Niu, Z.Zhang, R.Chen, G.Feng, and S.Bi (2011).
Electrochemical studies on the permeable characteristics of thiol-modified double-stranded DNA self-assembled monolayers on gold.
  Analyst, 136, 2090-2099.  
20798308 S.C.Harrison (2010).
Virology. Looking inside adenovirus.
  Science, 329, 1026-1027.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.