spacer
spacer

PDBsum entry 3gpl

Go to PDB code: 
protein dna_rna ligands metals Protein-protein interface(s) links
Hydrolase/DNA PDB id
3gpl
Jmol
Contents
Protein chains
516 a.a. *
DNA/RNA
Ligands
ANP ×2
Metals
_MG ×2
Waters ×186
* Residue conservation analysis
PDB id:
3gpl
Name: Hydrolase/DNA
Title: Crystal structure of the ternary complex of recd2 with DNA and adpnp
Structure: Exodeoxyribonuclease v, subunit recd, putative. Chain: a, b. Fragment: unp residues 151-715. Engineered: yes. Other_details: n-terminus deletion mutant of recd2. 5'-d( T Tp Tp Tp Tp Tp Tp T)-3'. Chain: x, y. Engineered: yes. Other_details: single-stranded oligo-dt
Source: Deinococcus radiodurans r1. Organism_taxid: 243230. Strain: r1 / dsm 20539 / ifo 15346 / lmg 4051 / ncib 9279. Atcc: 13939. Gene: dr_1902, recd2. Expressed in: escherichia coli. Expression_system_taxid: 562. Synthetic: yes. Other_details: synthetic DNA
Resolution:
2.50Å     R-factor:   0.232     R-free:   0.273
Authors: K.Saikrishnan,N.Cook,D.B.Wigley
Date:
23-Mar-09     Release date:   16-Jun-09    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q9RT63  (Q9RT63_DEIRA) -  ATP-dependent RecD-like DNA helicase
Seq:
Struc:
 
Seq:
Struc:
715 a.a.
516 a.a.
Key:    PfamA domain  PfamB domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.3.6.4.12  - Dna helicase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: ATP + H2O = ADP + phosphate
ATP
+ H(2)O
= ADP
+ phosphate
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Biochemical function     nucleotide binding     3 terms