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PDBsum entry 3etd

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protein ligands links
Oxidoreductase PDB id
3etd
Jmol
Contents
Protein chains
(+ 0 more) 501 a.a. *
Ligands
GLU ×6
NDP ×6
GTP ×6
B1T ×6
Waters ×88
* Residue conservation analysis
PDB id:
3etd
Name: Oxidoreductase
Title: Structure of glutamate dehydrogenase complexed with bithionol
Structure: Glud1 protein. Chain: a, b, c, d, e, f
Source: Bos taurus. Bovine,cow. Organism_taxid: 9913. Tissue: liver
Resolution:
2.50Å     R-factor:   0.239     R-free:   0.257
Authors: M.Li,T.J.Smith
Date:
07-Oct-08     Release date:   09-Jun-09    
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P00366  (DHE3_BOVIN) -  Glutamate dehydrogenase 1, mitochondrial
Seq:
Struc:
 
Seq:
Struc:
558 a.a.
501 a.a.*
Key:    PfamA domain  PfamB domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 5 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: E.C.1.4.1.3  - Glutamate dehydrogenase (NAD(P)(+)).
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-glutamate + H2O + NAD(P)(+) = 2-oxoglutarate + NH3 + NAD(P)H
L-glutamate
Bound ligand (Het Group name = GLU)
matches with 90.00% similarity
+ H(2)O
+
NAD(P)(+)
Bound ligand (Het Group name = NDP)
corresponds exactly
= 2-oxoglutarate
+ NH(3)
+ NAD(P)H
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     mitochondrion   3 terms 
  Biological process     tricarboxylic acid metabolic process   6 terms 
  Biochemical function     nucleotide binding     7 terms