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PDBsum entry 3e5n

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protein links
Ligase PDB id
3e5n
Jmol
Contents
Protein chain
340 a.a. *
Waters ×142
* Residue conservation analysis
PDB id:
3e5n
Name: Ligase
Title: Crystal strucutre of d-alanine-d-alanine ligase from xanthomonas oryzae pv. Oryzae kacc10331
Structure: D-alanine-d-alanine ligase a. Chain: a. Engineered: yes
Source: Xanthomonas oryzae pv. Oryzae. Organism_taxid: 342109. Strain: maff 311018. Gene: xoo0324. Expressed in: escherichia coli. Expression_system_taxid: 562.
Resolution:
2.00Å     R-factor:   0.199     R-free:   0.265
Authors: T.N.T.Doan,J.K.Kim,H.S.Kim,Y.J.Ahn,J.G.Kim,B.M.Lee,L.W.Kang
Key ref: T.N.T.Doan et al. Crystal strucutre of d-Alanine-D-Alanine ligase from xanthomonas oryzae pv. Oryzae kacc10331. To be published, .
Date:
14-Aug-08     Release date:   18-Aug-09    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q2P8P8  (Q2P8P8_XANOM) -  D-alanine--D-alanine ligase
Seq:
Struc:
367 a.a.
340 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Enzyme reactions 
   Enzyme class: E.C.6.3.2.4  - D-alanine--D-alanine ligase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

      Pathway:
Peptidoglycan Biosynthesis (Part 1)
      Reaction: ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine
ATP
+ 2 × D-alanine
= ADP
+ phosphate
+ D-alanyl-D-alanine
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     cytoplasm   1 term 
  Biological process     cell wall organization   3 terms 
  Biochemical function     catalytic activity     8 terms