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PDBsum entry 3e1b

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protein dna_rna Protein-protein interface(s) links
Ribosome PDB id
3e1b
Jmol
Contents
Protein chains
94 a.a. *
121 a.a. *
144 a.a. *
136 a.a. *
127 a.a. *
117 a.a. *
114 a.a. *
117 a.a. *
103 a.a. *
110 a.a. *
99 a.a. *
267 a.a. *
102 a.a. *
84 a.a. *
63 a.a. *
58 a.a. *
70 a.a. *
56 a.a. *
54 a.a. *
46 a.a. *
64 a.a. *
38 a.a. *
209 a.a. *
213 a.a. *
201 a.a. *
178 a.a. *
176 a.a. *
149 a.a. *
141 a.a. *
140 a.a. *
DNA/RNA
* Residue conservation analysis
PDB id:
3e1b
Name: Ribosome
Title: Structure of the 50s subunit of e. Coli ribosome in pre-acco state
Structure: 5s rrna. Chain: a. 23s rrna. Chain: b. 50s ribosomal protein l25. Chain: c. 50s ribosomal protein l14. Chain: d. 50s ribosomal protein l15.
Source: Escherichia coli. Organism_taxid: 562. Shigella sonnei. Organism_taxid: 624. Sulfolobus acidocaldarius. Organism_taxid: 2285. Organism_taxid: 562
Authors: B.Devkota,T.R.Caulfield,R.-Z.Tan,S.C.Harvey
Key ref: B.Devkota et al. The structure of the e. Coli ribosome before and after accommodation: implications for proofreading. To be published, .
Date:
03-Aug-08     Release date:   18-Aug-09    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P68919  (RL25_ECOLI) -  50S ribosomal protein L25
Seq:
Struc:
94 a.a.
94 a.a.
Protein chain
Pfam   ArchSchema ?
P0ADY3  (RL14_ECOLI) -  50S ribosomal protein L14
Seq:
Struc:
123 a.a.
121 a.a.
Protein chain
Pfam   ArchSchema ?
P02413  (RL15_ECOLI) -  50S ribosomal protein L15
Seq:
Struc:
144 a.a.
144 a.a.
Protein chain
Pfam   ArchSchema ?
P0ADY7  (RL16_ECOLI) -  50S ribosomal protein L16
Seq:
Struc:
136 a.a.
136 a.a.
Protein chain
Pfam   ArchSchema ?
P0AG44  (RL17_ECOLI) -  50S ribosomal protein L17
Seq:
Struc:
127 a.a.
127 a.a.
Protein chain
No UniProt id for this chain
Struc: 117 a.a.
Protein chain
No UniProt id for this chain
Struc: 114 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7L3  (RL20_ECOLI) -  50S ribosomal protein L20
Seq:
Struc:
118 a.a.
117 a.a.
Protein chain
No UniProt id for this chain
Struc: 103 a.a.
Protein chain
Pfam   ArchSchema ?
P61175  (RL22_ECOLI) -  50S ribosomal protein L22
Seq:
Struc:
110 a.a.
110 a.a.
Protein chain
Pfam   ArchSchema ?
P0ADZ0  (RL23_ECOLI) -  50S ribosomal protein L23
Seq:
Struc:
100 a.a.
99 a.a.
Protein chain
Pfam   ArchSchema ?
P60422  (RL2_ECOLI) -  50S ribosomal protein L2
Seq:
Struc:
273 a.a.
267 a.a.
Protein chain
Pfam   ArchSchema ?
P60624  (RL24_ECOLI) -  50S ribosomal protein L24
Seq:
Struc:
104 a.a.
102 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7L8  (RL27_ECOLI) -  50S ribosomal protein L27
Seq:
Struc:
85 a.a.
84 a.a.
Protein chain
No UniProt id for this chain
Struc: 63 a.a.
Protein chain
No UniProt id for this chain
Struc: 58 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7M9  (RL31_ECOLI) -  50S ribosomal protein L31
Seq:
Struc:
70 a.a.
70 a.a.
Protein chain
No UniProt id for this chain
Struc: 56 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7N9  (RL33_ECOLI) -  50S ribosomal protein L33
Seq:
Struc:
55 a.a.
54 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7P5  (RL34_ECOLI) -  50S ribosomal protein L34
Seq:
Struc:
46 a.a.
46 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7Q1  (RL35_ECOLI) -  50S ribosomal protein L35
Seq:
Struc:
65 a.a.
64 a.a.
Protein chain
No UniProt id for this chain
Struc: 38 a.a.
Protein chain
Pfam   ArchSchema ?
P60438  (RL3_ECOLI) -  50S ribosomal protein L3
Seq:
Struc:
209 a.a.
209 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7L0  (RL1_ECOLI) -  50S ribosomal protein L1
Seq:
Struc:
234 a.a.
213 a.a.*
Protein chain
No UniProt id for this chain
Struc: 201 a.a.
Protein chain
Pfam   ArchSchema ?
P62399  (RL5_ECOLI) -  50S ribosomal protein L5
Seq:
Struc:
179 a.a.
178 a.a.
Protein chain
Pfam   ArchSchema ?
P0AG55  (RL6_ECOLI) -  50S ribosomal protein L6
Seq:
Struc:
177 a.a.
176 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7R1  (RL9_ECOLI) -  50S ribosomal protein L9
Seq:
Struc:
149 a.a.
149 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7J7  (RL11_ECOLI) -  50S ribosomal protein L11
Seq:
Struc:
142 a.a.
141 a.a.
Protein chain
Pfam   ArchSchema ?
P0AA10  (RL13_ECOLI) -  50S ribosomal protein L13
Seq:
Struc:
142 a.a.
140 a.a.
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 154 residue positions (black crosses)

 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     intracellular   5 terms 
  Biological process     response to antibiotic   10 terms 
  Biochemical function     structural constituent of ribosome     13 terms