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PDBsum entry 3d5f

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protein ligands links
Transcription PDB id
3d5f
Jmol
Contents
Protein chains
254 a.a. *
Ligands
L41 ×2
Waters ×87
* Residue conservation analysis
PDB id:
3d5f
Name: Transcription
Title: Crystal structure of ppar-delta complex
Structure: Peroxisome proliferator-activated receptor delta. Chain: a, b. Fragment: ligand binding domain, unp residues 175-441. Synonym: ppar-delta, ppar-beta, nuclear receptor subfamily 1 group c member 2, nuclear hormone receptor 1, nuc1, nuci. Engineered: yes. Mutation: yes
Source: Homo sapiens. Human. Expressed in: escherichia coli.
Resolution:
2.20Å     R-factor:   0.278     R-free:   0.281
Authors: Y.Amano
Key ref: A.Iwashita et al. Ppar-Delta activation contributes to neuroprotectio against thapsigargin-Induced sh-Sy5y cell death. To be published, .
Date:
16-May-08     Release date:   03-Jun-08    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q03181  (PPARD_HUMAN) -  Peroxisome proliferator-activated receptor delta
Seq:
Struc:
441 a.a.
254 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     nucleus   1 term 
  Biological process     steroid hormone mediated signaling pathway   2 terms 
  Biochemical function     DNA binding     4 terms