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PDBsum entry 3d47

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protein ligands metals Protein-protein interface(s) links
Lyase PDB id
3d47
Jmol
Contents
Protein chains
(+ 2 more) 405 a.a. *
Ligands
MLT ×8
Metals
_MG ×8
Waters ×1716
* Residue conservation analysis
PDB id:
3d47
Name: Lyase
Title: Crystal structure of l-rhamnonate dehydratase from salmonella typhimurium complexed with mg and d-malate
Structure: Putative galactonate dehydratase. Chain: a, b, c, d, e, f, g, h. Engineered: yes
Source: Salmonella typhimurium lt2. Organism_taxid: 99287. Strain: lt2 / sgsc1412. Atcc: 700720. Gene: yfaw, stm2291. Expressed in: escherichia coli. Expression_system_taxid: 562
Resolution:
1.80Å     R-factor:   0.202     R-free:   0.232
Authors: A.A.Fedorov,E.V.Fedorov,J.M.Sauder,S.K.Burley,J.A.Gerlt, S.C.Almo,New York Sgx Research Center For Structural Genomics (Nysgxrc)
Key ref: A.A.Fedorov et al. Crystal structure of l-Rhamnonate dehydratase from salmonella typhimurium complexed with mg and d-Malate.. To be published, .
Date:
14-May-08     Release date:   03-Jun-08    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q8ZNF9  (RHMD_SALTY) -  L-rhamnonate dehydratase
Seq:
Struc:
405 a.a.
405 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.4.2.1.90  - L-rhamnonate dehydratase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-rhamnonate = 2-dehydro-3-deoxy-L-rhamnonate + H2O
L-rhamnonate
=
2-dehydro-3-deoxy-L-rhamnonate
Bound ligand (Het Group name = MLT)
matches with 66.00% similarity
+ H(2)O
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Biological process     metabolic process   2 terms 
  Biochemical function     catalytic activity     5 terms