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PDBsum entry 3uoq

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protein dna_rna ligands metals Protein-protein interface(s) links
Ribosome PDB id
3uoq
Jmol
Contents
Protein chains
218 a.a.
206 a.a.
205 a.a.
150 a.a.
100 a.a.
151 a.a.
129 a.a.
127 a.a.
98 a.a.
117 a.a.
123 a.a.
114 a.a.
96 a.a.
88 a.a.
82 a.a.
80 a.a.
55 a.a.
79 a.a.
85 a.a.
51 a.a.
525 a.a.
DNA/RNA
Ligands
GNP
Metals
_MG
PDB id:
3uoq
Name: Ribosome
Title: Crystal structure of release factor rf3 trapped in the gtp s rotated conformation of the ribosome (without viomycin)
Structure: 16s rrna. Chain: a. 30s ribosomal protein s2. Chain: b. 30s ribosomal protein s3. Chain: c. 30s ribosomal protein s4. Chain: d. 30s ribosomal protein s5.
Source: Escherichia coli. Organism_taxid: 562. Strain: csh142. Synthetic: yes. Organism_taxid: 32630. Strain: mre600. Gene: b4375, jw5873, miad, prfc, termination release factor expressed in: escherichia coli. Expression_system_taxid: 469008.
Resolution:
3.70Å     R-factor:   0.240     R-free:   0.290
Authors: J.Zhou,L.Lancaster,S.Trakhanov,H.F.Noller
Key ref: J.Zhou et al. (2012). Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome. RNA, 18, 230-240. PubMed id: 22187675 DOI: 10.1261/rna.031187.111
Date:
17-Nov-11     Release date:   11-Jan-12    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P0A7V0  (RS2_ECOLI) -  30S ribosomal protein S2
Seq:
Struc:
241 a.a.
218 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7V3  (RS3_ECOLI) -  30S ribosomal protein S3
Seq:
Struc:
233 a.a.
206 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7V8  (RS4_ECOLI) -  30S ribosomal protein S4
Seq:
Struc:
206 a.a.
205 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7W1  (RS5_ECOLI) -  30S ribosomal protein S5
Seq:
Struc:
167 a.a.
150 a.a.
Protein chain
Pfam   ArchSchema ?
P02358  (RS6_ECOLI) -  30S ribosomal protein S6
Seq:
Struc:
135 a.a.
100 a.a.
Protein chain
Pfam   ArchSchema ?
P02359  (RS7_ECOLI) -  30S ribosomal protein S7
Seq:
Struc:
179 a.a.
151 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7W7  (RS8_ECOLI) -  30S ribosomal protein S8
Seq:
Struc:
130 a.a.
129 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7X3  (RS9_ECOLI) -  30S ribosomal protein S9
Seq:
Struc:
130 a.a.
127 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7R5  (RS10_ECOLI) -  30S ribosomal protein S10
Seq:
Struc:
103 a.a.
98 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7R9  (RS11_ECOLI) -  30S ribosomal protein S11
Seq:
Struc:
129 a.a.
117 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7S3  (RS12_ECOLI) -  30S ribosomal protein S12
Seq:
Struc:
124 a.a.
123 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7S9  (RS13_ECOLI) -  30S ribosomal protein S13
Seq:
Struc:
118 a.a.
114 a.a.
Protein chain
Pfam   ArchSchema ?
P0AG59  (RS14_ECOLI) -  30S ribosomal protein S14
Seq:
Struc:
101 a.a.
96 a.a.
Protein chain
Pfam   ArchSchema ?
P0ADZ4  (RS15_ECOLI) -  30S ribosomal protein S15
Seq:
Struc:
89 a.a.
88 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7T3  (RS16_ECOLI) -  30S ribosomal protein S16
Seq:
Struc:
82 a.a.
82 a.a.
Protein chain
Pfam   ArchSchema ?
P0AG63  (RS17_ECOLI) -  30S ribosomal protein S17
Seq:
Struc:
84 a.a.
80 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7T7  (RS18_ECOLI) -  30S ribosomal protein S18
Seq:
Struc:
75 a.a.
55 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7U3  (RS19_ECOLI) -  30S ribosomal protein S19
Seq:
Struc:
92 a.a.
79 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7U7  (RS20_ECOLI) -  30S ribosomal protein S20
Seq:
Struc:
87 a.a.
85 a.a.
Protein chain
Pfam   ArchSchema ?
P68679  (RS21_ECOLI) -  30S ribosomal protein S21
Seq:
Struc:
71 a.a.
51 a.a.
Protein chain
Pfam   ArchSchema ?
P0A7I4  (RF3_ECOLI) -  Peptide chain release factor 3
Seq:
Struc:
 
Seq:
Struc:
529 a.a.
525 a.a.
Key:    PfamA domain  PfamB domain  Secondary structure  CATH domain

 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     intracellular   8 terms 
  Biological process     cytoplasmic translation   25 terms 
  Biochemical function     structural constituent of ribosome     25 terms  

 

 
DOI no: 10.1261/rna.031187.111 RNA 18:230-240 (2012)
PubMed id: 22187675  
 
 
Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome.
J.Zhou, L.Lancaster, S.Trakhanov, H.F.Noller.
 
  ABSTRACT  
 
No abstract given.