spacer
spacer
Go to PDB code: 
protein links
Transferase PDB-id
3e26
    Jmol     Help!  
Contents
Description
Header details
Header records
References
PROCHECK
Protein chain
274 a.a. *
Waters ×129

* Residue conservation analysis
Tools
Image Generation
AstexViewer™@PDBe
Run PROCHECK
Clefts Calculation
  
PDB id: 3e26
Name: Transferase
Title: Crystal structure of m. Tuberculosis glucosyl-3- phosphoglycerate synthase

Structure:
Putative uncharacterized protein. Chain: a. Synonym: glucosyl-3-phosphoglycerate synthase, gpgs. Engineered: yes

Source:
Mycobacterium tuberculosis. Organism_taxid: 1773. Gene: mt1246, rv1208. Expressed in: escherichia coli. Expression_system_taxid: 562.

UniProt:
O05309 (O05309_MYCTU) Pfam  
Seq:
Struc:
Seq: 324 a.a.
Struc: 274 a.a.
Key:    PfamA domain  PfamB domain
 Secondary structure

Resolution:
2.50Å

R-factor:
0.188

R-free:
0.221

Authors:
P.J.B.Pereira,N.Empadinhas,M.S.Costa,S.Macedo-Ribeiro

Key ref:
P.J.Pereira et al. (2008). Mycobacterium tuberculosis glucosyl-3-phosphoglycerate synthase: structure of a key enzyme in methylglucose lipopolysaccharide biosynthesis.. PLoS ONE, 3, e3748. [PubMed id: 19015727] [DOI: 10.1371/journal.pone.0003748]

Date:
05-Aug-08

Release date:
02-Dec-08

Related entries:
3e25
the udp and 3-phosphoglycerate ternary complex
Quick_links
RCSB
PDBe
SRS
MMDB
JenaLib
OCA
Proteopedia
CATH
SCOP
FSSP
HSSP
PDBSWS
PQS
ProSAT
Whatcheck
Procheck
Go to PROCHECK summary
Clefts
Clefts
Surface
RasMol surface
spacer
spacer

 
    Key reference    
 
 
DOI no: 10.1371/journal.pone.0003748 PLoS ONE 3:e3748 (2008)
PubMed id: 19015727  
 
 
Mycobacterium tuberculosis glucosyl-3-phosphoglycerate synthase: structure of a key enzyme in methylglucose lipopolysaccharide biosynthesis.
P.J.Pereira, N.Empadinhas, L.Albuquerque, B.Sá-Moura, M.S.da Costa, S.Macedo-Ribeiro.
 
  ABSTRACT  
 
Tuberculosis constitutes today a serious threat to human health worldwide, aggravated by the increasing number of identified multi-resistant strains of Mycobacterium tuberculosis, its causative agent, as well as by the lack of development of novel mycobactericidal compounds for the last few decades. The increased resilience of this pathogen is due, to a great extent, to its complex, polysaccharide-rich, and unusually impermeable cell wall. The synthesis of this essential structure is still poorly understood despite the fact that enzymes involved in glycosidic bond synthesis represent more than 1% of all M. tuberculosis ORFs identified to date. One of them is GpgS, a retaining glycosyltransferase (GT) with low sequence homology to any other GTs of known structure, which has been identified in two species of mycobacteria and shown to be essential for the survival of M. tuberculosis. To further understand the biochemical properties of M. tuberculosis GpgS, we determined the three-dimensional structure of the apo enzyme, as well as of its ternary complex with UDP and 3-phosphoglycerate, by X-ray crystallography, to a resolution of 2.5 and 2.7 A, respectively. GpgS, the first enzyme from the newly established GT-81 family to be structurally characterized, displays a dimeric architecture with an overall fold similar to that of other GT-A-type glycosyltransferases. These three-dimensional structures provide a molecular explanation for the enzyme's preference for UDP-containing donor substrates, as well as for its glucose versus mannose discrimination, and uncover the structural determinants for acceptor substrate selectivity. Glycosyltransferases constitute a growing family of enzymes for which structural and mechanistic data urges. The three-dimensional structures of M. tuberculosis GpgS now determined provide such data for a novel enzyme family, clearly establishing the molecular determinants for substrate recognition and catalysis, while providing an experimental scaffold for the structure-based rational design of specific inhibitors, which lay the foundation for the development of novel anti-tuberculosis therapies.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
19421329 D.Kaur, H.Pham, G.Larrouy-Maumus, M.Rivière, V.Vissa, M.E.Guerin, G.Puzo, P.J.Brennan, and M.Jackson (2009).
Initiation of methylglucose lipopolysaccharide biosynthesis in mycobacteria.
  PLoS ONE, 4, e5447.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time.