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PDBsum entry 2yzg

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protein Protein-protein interface(s) links
Ligase PDB id
2yzg
Jmol
Contents
Protein chains
319 a.a. *
Waters ×204
* Residue conservation analysis
PDB id:
2yzg
Name: Ligase
Title: Crystal structure of d-ala:d-ala ligase from thermus thermop
Structure: D-alanine--d-alanine ligase. Chain: a, b, c. Synonym: d-ala:d-ala ligase. Engineered: yes
Source: Thermus thermophilus. Organism_taxid: 300852. Strain: hb8. Expressed in: escherichia coli. Expression_system_taxid: 562.
Resolution:
2.30Å     R-factor:   0.243     R-free:   0.290
Authors: Y.Kitamura,S.Yokoyama,S.Kuramitsu,Riken Structural Genomics/proteomics Initiative (Rsgi)
Key ref: Y.Kitamura et al. Crystal structure of d-Ala:d-Ala ligase from thermus thermophilus hb8. To be published, .
Date:
05-May-07     Release date:   06-Nov-07    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q5SHZ3  (DDL_THET8) -  D-alanine--D-alanine ligase
Seq:
Struc:
319 a.a.
319 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.6.3.2.4  - D-alanine--D-alanine ligase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

      Pathway:
Peptidoglycan Biosynthesis (Part 1)
      Reaction: ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine
ATP
+ 2 × D-alanine
= ADP
+ phosphate
+ D-alanyl-D-alanine
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     cytoplasm   1 term 
  Biological process     cell wall organization   3 terms 
  Biochemical function     catalytic activity     8 terms