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PDBsum entry 2yvh

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protein dna_rna Protein-protein interface(s) links
Transcription/DNA PDB id
2yvh
Jmol
Contents
Protein chains
171 a.a. *
DNA/RNA
Waters ×3
* Residue conservation analysis
PDB id:
2yvh
Name: Transcription/DNA
Title: Crystal structure of the operator-binding form of the multi- binding transcriptional repressor cgmr
Structure: Transcriptional regulator. Chain: a, b, c, d. Synonym: bacterial regulatory protein, tetr family. Engineered: yes. 5'-d( Dtp Dap Dap Dcp Dtp Dgp Dtp Dap Dcp Dcp Dgp c)-3'. Chain: e, g. Engineered: yes. Other_details: cgl2612 operator DNA upper strand.
Source: Corynebacterium glutamicum. Organism_taxid: 196627. Strain: atcc13032. Gene: cgl2612. Expressed in: escherichia coli. Expression_system_taxid: 469008. Synthetic: yes. Other_details: sequence found in thE C.Glutamicum genome.. Other_details: sequence found in thE C.Glutamicum genome.
Resolution:
2.50Å     R-factor:   0.222     R-free:   0.259
Authors: H.Itou,Y.Shirakihara,I.Tanaka
Key ref: H.Itou et al. (2010). Crystal structures of the multidrug binding repressor Corynebacteriumglutamicum CgmR in complex with inducers and with an operator. J Mol Biol, 403, 174-184. PubMed id: 20691702 DOI: 10.1016/j.jmb.2010.07.042
Date:
12-Apr-07     Release date:   15-Apr-08    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q8NMG3  (Q8NMG3_CORGL) -  Bacterial regulatory protein, TetR family
Seq:
Struc:
177 a.a.
171 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Gene Ontology (GO) functional annotation 
  GO annot!
  Biological process     transcription, DNA-dependent   2 terms 
  Biochemical function     DNA binding     1 term  

 

 
DOI no: 10.1016/j.jmb.2010.07.042 J Mol Biol 403:174-184 (2010)
PubMed id: 20691702  
 
 
Crystal structures of the multidrug binding repressor Corynebacteriumglutamicum CgmR in complex with inducers and with an operator.
H.Itou, N.Watanabe, M.Yao, Y.Shirakihara, I.Tanaka.
 
  ABSTRACT  
 
No abstract given.

 

Literature references that cite this PDB file's key reference

  PubMed id Reference
21354180 T.B.Le, C.E.Stevenson, H.P.Fiedler, A.Maxwell, D.M.Lawson, and M.J.Buttner (2011).
Structures of the TetR-like simocyclinone efflux pump repressor, SimR, and the mechanism of ligand-mediated derepression.
  J Mol Biol, 408, 40-56.
PDB codes: 2y2z 2y30 2y31
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