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PDBsum entry 2rjy

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protein links
Structural protein PDB id
2rjy
Jmol
Contents
Protein chain
64 a.a. *
Waters ×82
* Residue conservation analysis
PDB id:
2rjy
Name: Structural protein
Title: Crystal structure of villin headpiece, p21 21 21 space group
Structure: Villin-1. Chain: a. Fragment: villin headpiece. Engineered: yes
Source: Gallus gallus. Chicken. Gene: vil1, vil. Expressed in: escherichia coli.
Resolution:
1.40Å     R-factor:   0.209     R-free:   0.233
Authors: J.Meng,C.J.Mcknight
Key ref: J.Meng and C.J.McKnight (2008). Crystal structure of a pH-stabilized mutant of villin headpiece. Biochemistry, 47, 4644-4650. PubMed id: 18370407 DOI: 10.1021/bi7022738
Date:
16-Oct-07     Release date:   23-Sep-08    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P02640  (VILI_CHICK) -  Villin-1
Seq:
Struc:
 
Seq:
Struc:
826 a.a.
64 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Gene Ontology (GO) functional annotation 
  GO annot!
  Biological process     cytoskeleton organization   1 term 
  Biochemical function     actin binding     1 term  

 

 
DOI no: 10.1021/bi7022738 Biochemistry 47:4644-4650 (2008)
PubMed id: 18370407  
 
 
Crystal structure of a pH-stabilized mutant of villin headpiece.
J.Meng, C.J.McKnight.
 
  ABSTRACT  
 
Villin-type headpiece domains are compact F-actin-binding motifs that have been used extensively as a model system to investigate protein folding by both experimental and computational methods. Villin headpiece (HP67) harbors a highly helical, thermostable, and autonomously folding subdomain in the C terminus (HP35), and because of this feature, HP67 is usually considered to be composed of a N- and C-terminal subdomain. Unlike the C-terminal subdomain, the N-terminal subdomain consists mainly of loops and turns, and the folding is dependent upon the presence of the C-terminal subdomain. The pH sensitivity of this subdomain is thought to arise from, at least partially, protonation of H41 buried in the hydrophobic core. Substitution of this histidine with tyrosine, another permissive residue at this position for naturally occurring sequences, increases not only the pH stability of HP67 but also the thermal stability and the cooperativity of thermal unfolding over a wide pH range (0.9-7.5). The crystal structures of wild-type HP67 and the H41Y mutant, determined under the same conditions, indicate that the H41Y substitution causes only localized rearrangement around the mutated residue. The F-actin-binding motif remains essentially the same after the mutation, accounting for the negligible effect of the mutation on F-actin affinity. The hydrogen bond formed between the imidazole ring of H41 and the backbone carbonyl of E14 of HP67 is eliminated by the H41Y mutation, which renders the extreme N terminus of H41Y more mobile; the hydrogen bond formed between the imidazole ring of H41 and the backbone nitrogen of D34 is replaced with that between the hydroxyl group of Y41 and the backbone nitrogen of D34 after the H41Y substitution. The increased hydrophobicity of tyrosine compensates for the loss of hydrogen bonds in the extreme N terminus and accounts for the increased stability and cooperativity of the H41Y mutant.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
19390152 J.Meng, and C.J.McKnight (2009).
Heterogeneity and dynamics in villin headpiece crystal structures.
  Acta Crystallogr D Biol Crystallogr, 65, 470-476.
PDB codes: 2rjw 2rjx
19644656 N.E.O'Connell, M.J.Grey, Y.Tang, P.Kosuri, V.Z.Miloushev, D.P.Raleigh, and A.G.Palmer (2009).
Partially folded equilibrium intermediate of the villin headpiece HP67 defined by 13C relaxation dispersion.
  J Biomol NMR, 45, 85-98.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.