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PDBsum entry 2os5

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protein ligands Protein-protein interface(s) links
Cytokine PDB id
2os5

 

 

 

 

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JSmol PyMol  
Contents
Protein chains
118 a.a. *
Ligands
SO4 ×4
Waters ×278
* Residue conservation analysis
PDB id:
2os5
Name: Cytokine
Title: Macrophage migration inhibitory factor from ancylostoma ceylanicum
Structure: Acemif. Chain: a, b, c, d. Engineered: yes
Source: Ancylostoma ceylanicum. Organism_taxid: 53326. Expressed in: escherichia coli. Expression_system_taxid: 562.
Resolution:
1.60Å     R-factor:   0.195     R-free:   0.200
Authors: Y.Cho,E.Lolis
Key ref:
Y.Cho et al. (2007). Structural and functional characterization of a secreted hookworm Macrophage Migration Inhibitory Factor (MIF) that interacts with the human MIF receptor CD74. J Biol Chem, 282, 23447-23456. PubMed id: 17567581 DOI: 10.1074/jbc.M702950200
Date:
05-Feb-07     Release date:   12-Jun-07    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
A4GRE3  (A4GRE3_9BILA) -  Macrophage migration inhibitory factor from Ancylostoma ceylanicum
Seq:
Struc:
119 a.a.
118 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.?
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

 

 
DOI no: 10.1074/jbc.M702950200 J Biol Chem 282:23447-23456 (2007)
PubMed id: 17567581  
 
 
Structural and functional characterization of a secreted hookworm Macrophage Migration Inhibitory Factor (MIF) that interacts with the human MIF receptor CD74.
Y.Cho, B.F.Jones, J.J.Vermeire, L.Leng, L.DiFedele, L.M.Harrison, H.Xiong, Y.K.Kwong, Y.Chen, R.Bucala, E.Lolis, M.Cappello.
 
  ABSTRACT  
 
Hookworms, parasitic nematodes that infect nearly one billion people worldwide, are a major cause of anemia and malnutrition. We hypothesize that hookworms actively manipulate the host immune response through the production of specific molecules designed to facilitate infection by larval stages and adult worm survival within the intestine. A full-length cDNA encoding a secreted orthologue of the human cytokine, Macrophage Migration Inhibitory Factor (MIF) has been cloned from the hookworm Ancylostoma ceylanicum. Elucidation of the three-dimensional crystal structure of recombinant AceMIF (rAceMIF) revealed an overall structural homology with significant differences in the tautomerase sites of the human and hookworm proteins. The relative bioactivities of human and hookworm MIF proteins were compared using in vitro assays of tautomerase activity, macrophage migration, and binding to MIF receptor CD74. The activity of rAceMIF was not inhibited by the ligand ISO-1, which was previously determined to be an inhibitor of the catalytic site of human MIF. These data define unique immunological, structural, and functional characteristics of AceMIF, thereby establishing the potential for selectively inhibiting the hookworm cytokine as a means of reducing parasite survival and disease pathogenesis.
 
  Selected figure(s)  
 
Figure 3.
FIGURE 3. Topological comparison of AceMIF and hMIF. A, backbone ribbon diagrams of AceMIF and hMIF. Secondary structural elements are represented in red ( -helix), yellow ( -strand), and green (random coil). B, trimers of the two MIFs are superimposed. Human MIF is represented in yellow and AceMIF in red. The approximate location of the active site is between two subunits and indicated by the designation Pro1.
Figure 5.
FIGURE 5. Comparative views of the active sites of hMIF and AceMIF. A, view into the cavity of the active sites of AceMIF and hMIF. The figure shows the substrate HPP bound in the active site of hMIF (50), which is displayed in stick representation. B, superposition of the active sites of AceMIF and hMIF, with HPP bound to hMIF. Residues within hydrogen-bonding distance to HPP are colored in red (AceMIF) or yellow (hMIF). Residue codes correspond to AceMIF. Residues in parentheses correspond to hMIF. Two adjacent protomers (colored in cyan and green) in the trimer form the active site, and there are three active sites in each trimer. C, hydrogen bonds and hydrophobic interactions between HPP and interacting residues in a model of AceMIF:HPP and the crystal structure of hMIF:HPP (50), respectively, are shown. The residues involved in hydrophobic interactions with HPP are drawn as a spiked hemisphere. Distances for hydrogen bonds are in green dashed lines with their distance in Angstrom units.
 
  The above figures are reprinted by permission from the ASBMB: J Biol Chem (2007, 282, 23447-23456) copyright 2007.  
  Figures were selected by an automated process.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
20804783 F.Li, S.Huang, L.Wang, J.Yang, H.Zhang, L.Qiu, L.Li, and L.Song (2011).
A macrophage migration inhibitory factor like gene from scallop Chlamys farreri: Involvement in immune response and wound healing.
  Dev Comp Immunol, 35, 62-71.  
21352830 K.Kucera, L.M.Harrison, M.Cappello, and Y.Modis (2011).
Ancylostoma ceylanicum excretory-secretory protein 2 adopts a netrin-like fold and defines a novel family of nematode proteins.
  J Mol Biol, 408, 9.
PDB code: 3nsw
  21204854 M.K.Cho, C.H.Lee, and H.S.Yu (2011).
Amelioration of intestinal colitis by macrophage migration inhibitory factor isolated from intestinal parasites through toll-like receptor 2.
  Parasite Immunol, 33, 265-275.  
21462001 R.Bungiro, and M.Cappello (2011).
Twenty-first century progress toward the global control of human hookworm infection.
  Curr Infect Dis Rep, 13, 210-217.  
20886098 A.Baeza Garcia, R.J.Pierce, B.Gourbal, E.Werkmeister, D.Colinet, J.M.Reichhart, C.Dissous, and C.Coustau (2010).
Involvement of the cytokine MIF in the snail host immune response to the parasite Schistosoma mansoni.
  PLoS Pathog, 6, 0.  
21124783 T.D.Schoep, A.Fulurija, F.Good, W.Lu, R.P.Himbeck, C.Schwan, S.S.Choi, D.E.Berg, P.R.Mittl, M.Benghezal, and B.J.Marshall (2010).
Surface properties of Helicobacter pylori urease complex are essential for persistence.
  PLoS One, 5, e15042.  
20534506 Y.Cho, G.V.Crichlow, J.J.Vermeire, L.Leng, X.Du, M.E.Hodsdon, R.Bucala, M.Cappello, M.Gross, F.Gaeta, K.Johnson, and E.J.Lolis (2010).
Allosteric inhibition of macrophage migration inhibitory factor revealed by ibudilast.
  Proc Natl Acad Sci U S A, 107, 11313-11318.
PDB codes: 3ijg 3ijj
19260777 B.L.Barrilleaux, D.G.Phinney, B.W.Fischer-Valuck, K.C.Russell, G.Wang, D.J.Prockop, and K.C.O'Connor (2009).
Small-molecule antagonist of macrophage migration inhibitory factor enhances migratory response of mesenchymal stem cells to bronchial epithelial cells.
  Tissue Eng Part A, 15, 2335-2346.  
19406170 J.P.Hewitson, J.R.Grainger, and R.M.Maizels (2009).
Helminth immunoregulation: the role of parasite secreted proteins in modulating host immunity.
  Mol Biochem Parasitol, 167, 1.  
19179453 L.Prieto-Lafuente, W.F.Gregory, J.E.Allen, and R.M.Maizels (2009).
MIF homologues from a filarial nematode parasite synergize with IL-4 to induce alternative activation of host macrophages.
  J Leukoc Biol, 85, 844-854.  
19827093 S.E.Dobson, K.D.Augustijn, J.A.Brannigan, C.Schnick, C.J.Janse, E.J.Dodson, A.P.Waters, and A.J.Wilkinson (2009).
The crystal structures of macrophage migration inhibitory factor from Plasmodium falciparum and Plasmodium berghei.
  Protein Sci, 18, 2578-2591.
PDB codes: 2wkb 2wkf
  18523291 D.Kamir, S.Zierow, L.Leng, Y.Cho, Y.Diaz, J.Griffith, C.McDonald, M.Merk, R.A.Mitchell, J.Trent, Y.Chen, Y.K.Kwong, H.Xiong, J.Vermeire, M.Cappello, D.McMahon-Pratt, J.Walker, J.Bernhagen, E.Lolis, and R.Bucala (2008).
A Leishmania ortholog of macrophage migration inhibitory factor modulates host macrophage responses.
  J Immunol, 180, 8250-8261.
PDB code: 3b64
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.

 

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