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PDBsum entry 2kcg

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protein links
Plant protein PDB id
2kcg
Jmol
Contents
Protein chain
30 a.a. *
* Residue conservation analysis
PDB id:
2kcg
Name: Plant protein
Title: Solution structure of cycloviolacin o2
Structure: Cycloviolacin-o2. Chain: a
Source: Viola odorata. Sweet violet. Organism_taxid: 97441
NMR struc: 20 models
Authors: C.K.Wang
Key ref: C.K.Wang et al. (2009). Despite a conserved cystine knot motif, different cyclotides have different membrane binding modes. Biophys J, 97, 1471-1481. PubMed id: 19720036
Date:
22-Dec-08     Release date:   21-Jul-09    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P58434  (CYO2_VIOOD) -  Cycloviolacin-O2
Seq:
Struc:
30 a.a.
30 a.a.
Key:    PfamA domain  Secondary structure

 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     cellular_component   1 term 
  Biological process     hemolysis in other organism   3 terms 
  Biochemical function     molecular_function     1 term  

 

 
Biophys J 97:1471-1481 (2009)
PubMed id: 19720036  
 
 
Despite a conserved cystine knot motif, different cyclotides have different membrane binding modes.
C.K.Wang, M.L.Colgrave, D.C.Ireland, Q.Kaas, D.J.Craik.
 
  ABSTRACT  
 
Cyclotides are cyclic proteins produced by plants for defense against pests. Because of their remarkable stability and diverse bioactivities, they have a range of potential therapeutic applications. The bioactivities of cyclotides are believed to be mediated through membrane interactions. To determine the structural basis for the biological activity of the two major subfamilies of cyclotides, we determined the conformation and orientation of kalata B2 (kB2), a Möbius cyclotide, and cycloviolacin O2 (cO2), a bracelet cyclotide, bound to dodecylphosphocholine micelles, using NMR spectroscopy in the presence and absence of 5- and 16-doxylstearate relaxation probes. Analysis of binding curves using the Langmuir isotherm indicated that cO2 and kB2 have association constants of 7.0 x 10(3) M(-1) and 6.0 x 10(3) M(-1), respectively, consistent with the notion that they are bound near the surface, rather than buried deeply within the micelle. This suggestion is supported by the selective broadening of micelle-bound cyclotide NMR signals upon addition of paramagnetic Mn ions. The cyclotides from the different subfamilies exhibited clearly different binding orientations at the micelle surface. Structural analysis of cO2 confirmed that the main element of the secondary structure is a beta-hairpin centered in loop 5. A small helical turn is present in loop 3. Analysis of the surface profile of cO2 shows that a hydrophobic patch stretches over loops 2 and 3, in contrast to the hydrophobic patch of kB2, which predominantly involves loops 2 and 5. The different location of the hydrophobic patches in the two cyclotides explains their different binding orientations and provides an insight into the biological activities of cyclotides.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
21290122 N.L.Daly, K.J.Rosengren, S.T.Henriques, and D.J.Craik (2011).
NMR and protein structure in drug design: application to cyclotides and conotoxins.
  Eur Biophys J, 40, 359-370.  
20486762 T.L.Aboye, R.J.Clark, R.Burman, M.B.Roig, D.J.Craik, and U.Göransson (2011).
Interlocking disulfides in circular proteins: toward efficient oxidative folding of cyclotides.
  Antioxid Redox Signal, 14, 77-86.  
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