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Hydrolase PDB id
2gkl
Jmol
Contents
Protein chain
225 a.a. *
Ligands
PD2
GOL ×3
Metals
_ZN
Waters ×191
* Residue conservation analysis
PDB id:
2gkl
Name: Hydrolase
Title: Crystal structure of the zinc carbapenemase cpha in complex inhibitor pyridine-2,4-dicarboxylate
Structure: Beta-lactamase. Chain: a. Engineered: yes
Source: Aeromonas hydrophila. Organism_taxid: 644. Gene: cpha. Expressed in: escherichia coli. Expression_system_taxid: 562.
Resolution:
1.86Å     R-factor:   0.161     R-free:   0.196
Authors: G.Garau,O.Dideberg
Key ref: L.E.Horsfall et al. (2007). Competitive inhibitors of the CphA metallo-beta-lactamase from Aeromonas hydrophila. Antimicrob Agents Chemother, 51, 2136-2142. PubMed id: 17307979 DOI: 10.1128/AAC.00866-06
Date:
03-Apr-06     Release date:   13-Mar-07    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P26918  (BLAB_AERHY) -  Beta-lactamase
Seq:
Struc:
254 a.a.
225 a.a.
Key:    PfamA domain  Secondary structure

 Enzyme reactions 
   Enzyme class: E.C.3.5.2.6  - Beta-lactamase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

      Pathway:
Penicillin Biosynthesis and Metabolism
      Reaction: A beta-lactam + H2O = a substituted beta-amino acid
      Cofactor: Zinc
 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     periplasmic space   1 term 
  Biological process     response to antibiotic   2 terms 
  Biochemical function     hydrolase activity     4 terms  

 

 
DOI no: 10.1128/AAC.00866-06 Antimicrob Agents Chemother 51:2136-2142 (2007)
PubMed id: 17307979  
 
 
Competitive inhibitors of the CphA metallo-beta-lactamase from Aeromonas hydrophila.
L.E.Horsfall, G.Garau, B.M.Liénard, O.Dideberg, C.J.Schofield, J.M.Frère, M.Galleni.
 
  ABSTRACT  
 
Various inhibitors of metallo-beta-lactamases have been reported; however, none are effective for all subgroups. Those that have been found to inhibit the enzymes of subclass B2 (catalytically active with one zinc) either contain a thiol (and show less inhibition towards this subgroup than towards the dizinc members of B1 and B3) or are inactivators behaving as substrates for the dizinc family members. The present work reveals that certain pyridine carboxylates are competitive inhibitors of CphA, a subclass B2 enzyme. X-ray crystallographic analyses demonstrate that pyridine-2,4-dicarboxylic acid chelates the zinc ion in a bidentate manner within the active site. Salts of these compounds are already available and undergoing biomedical testing for various nonrelated purposes. Pyridine carboxylates appear to be useful templates for the development of more-complex, selective, nontoxic inhibitors of subclass B2 metallo-beta-lactamases.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
20669241 A.L.Stamp, P.Owen, K.E.Omari, C.E.Nichols, M.Lockyer, H.K.Lamb, I.G.Charles, A.R.Hawkins, and D.K.Stammers (2010).
Structural and functional characterization of Salmonella enterica serovar Typhimurium YcbL: an unusual Type II glyoxalase.
  Protein Sci, 19, 1897-1905.
PDB code: 2xf4
20394454 C.Bebrone, P.Lassaux, L.Vercheval, J.S.Sohier, A.Jehaes, E.Sauvage, and M.Galleni (2010).
Current challenges in antimicrobial chemotherapy: focus on ß-lactamase inhibition.
  Drugs, 70, 651-679.  
20121112 P.Oelschlaeger, N.Ai, K.T.Duprez, W.J.Welsh, and J.H.Toney (2010).
Evolving carbapenemases: can medicinal chemists advance one step ahead of the coming storm?
  J Med Chem, 53, 3013-3027.  
20065329 S.M.Drawz, and R.A.Bonomo (2010).
Three decades of beta-lactamase inhibitors.
  Clin Microbiol Rev, 23, 160-201.  
19651913 C.Bebrone, H.Delbrück, M.B.Kupper, P.Schlömer, C.Willmann, J.M.Frère, R.Fischer, M.Galleni, and K.M.Hoffmann (2009).
The structure of the dizinc subclass B2 metallo-beta-lactamase CphA reveals that the second inhibitory zinc ion binds in the histidine site.
  Antimicrob Agents Chemother, 53, 4464-4471.
PDB codes: 3f9o 3fai
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.