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protein dna_rna metals links
Transcription/DNA PDB id
2gat
Jmol
Contents
Protein chain
66 a.a. *
DNA/RNA
Metals
_ZN
* Residue conservation analysis
PDB id:
2gat
Name: Transcription/DNA
Title: Solution structure of thE C-terminal domain of chicken gata- 1 bound to DNA, nmr, regularized mean structure
Structure: DNA (5'- d( Gp Tp Tp Gp Cp Ap Gp Ap Tp Ap Ap Ap Cp Ap Tp T)-3'). Chain: b. Engineered: yes. DNA (5'- d( Ap Ap Tp Gp Tp Tp Tp Ap Tp Cp Tp Gp Cp Ap Ap C)-3'). Chain: c. Engineered: yes. Erythroid transcription factor gata-1.
Source: Synthetic: yes. Gallus gallus. Chicken. Organism_taxid: 9031. Expressed in: escherichia coli. Expression_system_taxid: 562
NMR struc: 1 models
Authors: G.M.Clore,N.Tjandra,M.Starich,J.G.Omichinski,A.M.Gronenborn
Key ref: N.Tjandra et al. (1997). Use of dipolar 1H-15N and 1H-13C couplings in the structure determination of magnetically oriented macromolecules in solution. Nat Struct Biol, 4, 732-738. PubMed id: 9303001 DOI: 10.1038/nsb0997-732
Date:
07-Nov-97     Release date:   28-Jan-98    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P17678  (GATA1_CHICK) -  Erythroid transcription factor
Seq:
Struc: 		304 a.a.
66 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Gene Ontology (GO) functional annotation 
  GO annot!
  Biological process     regulation of transcription, DNA-dependent   1 term 
  Biochemical function     transcription factor activity     3 terms  

 

 
DOI no: 10.1038/nsb0997-732 Nat Struct Biol 4:732-738 (1997)
PubMed id: 9303001  
 
 
Use of dipolar 1H-15N and 1H-13C couplings in the structure determination of magnetically oriented macromolecules in solution.
N.Tjandra, J.G.Omichinski, A.M.Gronenborn, G.M.Clore, A.Bax.
 
  ABSTRACT  
 
Anisotropy of the molecular magnetic susceptibility gives rise to a small degree of alignment. The resulting residual dipolar couplings, which can now be measured with the advent of higher magnetic fields in NMR, contain information on the orientation of the internuclear vectors relative to the molecular magnetic susceptibility tensor, thereby providing information on long range order that is not accessible by any of the solution NMR parameters currently used in structure determination. Thus, the dipolar couplings constitute unique and powerful restraints in determining the structures of magnetically oriented macromolecules in solution. The method is demonstrated on a complex of the DNA-binding domain of the transcription factor GATA-1 with a 16 base pair oligodeoxyribonucleotide.
 

Literature references that cite this PDB file's key reference

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  Biochemistry, 42, 14729-14740.
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  Proc Natl Acad Sci U S A, 99, 6713-6718.  
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De novo structure determination from residual dipolar couplings by NMR spectroscopy.
  Angew Chem Int Ed Engl, 41, 437-440.  
11742127 B.Xu, Q.X.Hua, S.H.Nakagawa, W.Jia, Y.C.Chu, P.G.Katsoyannis, and M.A.Weiss (2002).
A cavity-forming mutation in insulin induces segmental unfolding of a surrounding alpha-helix.
  Protein Sci, 11, 104-116.
PDB code: 1k3m
12202490 G.Cornilescu, B.R.Lee, C.C.Cornilescu, G.Wang, A.Peterkofsky, and G.M.Clore (2002).
Solution structure of the phosphoryl transfer complex between the cytoplasmic A domain of the mannitol transporter IIMannitol and HPr of the Escherichia coli phosphotransferase system.
  J Biol Chem, 277, 42289-42298.
PDB code: 1j6t
11959490 G.M.Clore, and C.D.Schwieters (2002).
Theoretical and computational advances in biomolecular NMR spectroscopy.
  Curr Opin Struct Biol, 12, 146-153.  
11927952 T.C.Leeper, M.B.Martin, H.Kim, S.Cox, V.Semenchenko, F.J.Schmidt, and S.R.Van Doren (2002).
Structure of the UGAGAU hexaloop that braces Bacillus RNase P for action.
  Nat Struct Biol, 9, 397-403.
PDB codes: 1jox 1jp0
  12121645 T.S.Ulmer, J.M.Werner, and I.D.Campbell (2002).
SH3-SH2 domain orientation in Src kinases: NMR studies of Fyn.
  Structure, 10, 901-911.  
11327811 F.Arnesano, L.Banci, I.Bertini, D.L.Huffman, and T.V.O'Halloran (2001).
Solution structure of the Cu(I) and apo forms of the yeast metallochaperone, Atx1.
  Biochemistry, 40, 1528-1539.
PDB codes: 1fd8 1fes
11180328 H.Desvaux, J.C.Gabriel, P.Berthault, and F.Camerel (2001).
First Use of a Mineral Liquid Crystal for Measurement of Residual Dipolar Couplings of a Nonlabeled Biomolecule We would like to thank Dr. Patrick Davidson for helpful discussions, Stéphane Grolleau for TGA (thermogravimetric analysis) measurements, and Prof. Pierre Sinaÿ and Dr. Yongmin Zhang for the gift of the pentasaccharide. Financial support from the CNRS, the Ministry of Education (PhD fellowship for F.C.), the Région Pays de Loire, and the GDR-CNRS 690 FORMES (D(2)O) is gratefully acknowledged.
  Angew Chem Int Ed Engl, 40, 373-376.  
11274458 H.Schwalbe, S.B.Grimshaw, A.Spencer, M.Buck, J.Boyd, C.M.Dobson, C.Redfield, and L.J.Smith (2001).
A refined solution structure of hen lysozyme determined using residual dipolar coupling data.
  Protein Sci, 10, 677-688.
PDB code: 1e8l
11438724 L.Wang, Y.Pang, T.Holder, J.R.Brender, A.V.Kurochkin, and E.R.Zuiderweg (2001).
Functional dynamics in the active site of the ribonuclease binase.
  Proc Natl Acad Sci U S A, 98, 7684-7689.  
  11435110 S.Saha, J.Boyd, J.M.Werner, V.Knott, P.A.Handford, I.D.Campbell, and A.K.Downing (2001).
Solution structure of the LDL receptor EGF-AB pair: a paradigm for the assembly of tandem calcium binding EGF domains.
  Structure, 9, 451-456.
PDB code: 1hj7
  11152126 B.E.Ramirez, O.N.Voloshin, R.D.Camerini-Otero, and A.Bax (2000).
Solution structure of DinI provides insight into its mode of RecA inactivation.
  Protein Sci, 9, 2161-2169.
PDB codes: 1f0a 1ghh
10679350 E.Eisenstein, G.L.Gilliland, O.Herzberg, J.Moult, J.Orban, R.J.Poljak, L.Banerjei, D.Richardson, and A.J.Howard (2000).
Biological function made crystal clear - annotation of hypothetical proteins via structural genomics.
  Curr Opin Biotechnol, 11, 25-30.  
10851189 E.T.Mollova, and A.Pardi (2000).
NMR solution structure determination of RNAs.
  Curr Opin Struct Biol, 10, 298-302.  
10922057 G.M.Clore (2000).
Accurate and rapid docking of protein-protein complexes on the basis of intermolecular nuclear overhauser enhancement data and dipolar couplings by rigid body minimization.
  Proc Natl Acad Sci U S A, 97, 9021-9025.  
10820006 J.L.Battiste, and G.Wagner (2000).
Utilization of site-directed spin labeling and high-resolution heteronuclear nuclear magnetic resonance for global fold determination of large proteins with limited nuclear overhauser effect data.
  Biochemistry, 39, 5355-5365.  
  11080629 N.Blomberg, E.Baraldi, M.Sattler, M.Saraste, and M.Nilges (2000).
Structure of a PH domain from the C. elegans muscle protein UNC-89 suggests a novel function.
  Structure, 8, 1079-1087.
PDB code: 1fho
10858281 S.A.McCallum, T.K.Hitchens, C.Torborg, and G.S.Rule (2000).
Ligand-induced changes in the structure and dynamics of a human class Mu glutathione S-transferase.
  Biochemistry, 39, 7343-7356.  
  10211826 A.C.Drohat, N.Tjandra, D.M.Baldisseri, and D.J.Weber (1999).
The use of dipolar couplings for determining the solution structure of rat apo-S100B(betabeta).
  Protein Sci, 8, 800-809.
PDB code: 1b4c
  10631973 H.Aitio, A.Annila, S.Heikkinen, E.Thulin, T.Drakenberg, and I.Kilpeläinen (1999).
NMR assignments, secondary structure, and global fold of calerythrin, an EF-hand calcium-binding protein from Saccharopolyspora erythraea.
  Protein Sci, 8, 2580-2588.  
10508776 H.N.Moseley, and G.T.Montelione (1999).
Automated analysis of NMR assignments and structures for proteins.
  Curr Opin Struct Biol, 9, 635-642.  
11295749 H.Zhou, A.Vermeulen, F.M.Jucker, and A.Pardi (1999).
Incorporating residual dipolar couplings into the NMR solution structure determination of nucleic acids.
  Biopolymers, 52, 168-180.  
10226044 I.Bertini, and C.Luchinat (1999).
New applications of paramagnetic NMR in chemical biology.
  Curr Opin Chem Biol, 3, 145-151.  
10413474 M.W.Fischer, J.A.Losonczi, J.L.Weaver, and J.H.Prestegard (1999).
Domain orientation and dynamics in multidomain proteins from residual dipolar couplings.
  Biochemistry, 38, 9013-9022.  
  10610262 N.Tjandra (1999).
Establishing a degree of order: obtaining high-resolution NMR structures from molecular alignment.
  Structure, 7, R205-R211.  
  9782059 C.R.Sanders, and R.S.Prosser (1998).
Bicelles: a model membrane system for all seasons?
  Structure, 6, 1227-1234.  
9600889 G.M.Clore, and A.M.Gronenborn (1998).
New methods of structure refinement for macromolecular structure determination by NMR.
  Proc Natl Acad Sci U S A, 95, 5891-5898.  
  9818180 G.M.Clore, and A.M.Gronenborn (1998).
NMR structure determination of proteins and protein complexes larger than 20 kDa.
  Curr Opin Chem Biol, 2, 564-570.  
9646872 K.H.Gardner, and L.E.Kay (1998).
The use of 2H, 13C, 15N multidimensional NMR to study the structure and dynamics of proteins.
  Annu Rev Biophys Biomol Struct, 27, 357-406.  
9653132 M.W.Fischer, L.Zeng, A.Majumdar, and E.R.Zuiderweg (1998).
Characterizing semilocal motions in proteins by NMR relaxation studies.
  Proc Natl Acad Sci U S A, 95, 8016-8019.  
9818269 R.A.Laskowski, M.W.MacArthur, and J.M.Thornton (1998).
Validation of protein models derived from experiment.
  Curr Opin Struct Biol, 8, 631-639.  
9818267 V.Dötsch, and G.Wagner (1998).
New approaches to structure determination by NMR spectroscopy.
  Curr Opin Struct Biol, 8, 619-623.  
9345633 L.E.Kay, and K.H.Gardner (1997).
Solution NMR spectroscopy beyond 25 kDa.
  Curr Opin Struct Biol, 7, 722-731.  
9353189 N.Tjandra, and A.Bax (1997).
Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium.
  Science, 278, 1111-1114.  
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