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PDBsum entry 2w86

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protein metals links
Glycoprotein PDB id
2w86
Jmol
Contents
Protein chain
147 a.a. *
Metals
IOD ×3
_CA ×2
Waters ×148
* Residue conservation analysis
PDB id:
2w86
Name: Glycoprotein
Title: Crystal structure of fibrillin-1 domains cbegf9hyb2cbegf10, calcium saturated form
Structure: Fibrillin-1. Chain: a. Fragment: cbegf9hyb2cbegf10, residues 807-951. Synonym: fibrillin1. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Expressed in: escherichia coli. Expression_system_taxid: 511693.
Resolution:
1.80Å     R-factor:   0.187     R-free:   0.221
Authors: S.A.Jensen,S.Iqbal,E.D.Lowe,C.Redfield,P.A.Handford
Key ref:
S.A.Jensen et al. (2009). Structure and Interdomain Interactions of a Hybrid Domain: A Disulphide-Rich Module of the Fibrillin/LTBP Superfamily of Matrix Proteins. Structure, 17, 759-768. PubMed id: 19446531 DOI: 10.1016/j.str.2009.03.014
Date:
09-Jan-09     Release date:   26-May-09    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P35555  (FBN1_HUMAN) -  Fibrillin-1
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
2871 a.a.
147 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 2 residue positions (black crosses)

 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     proteinaceous extracellular matrix   1 term 
  Biochemical function     extracellular matrix structural constituent     2 terms  

 

 
DOI no: 10.1016/j.str.2009.03.014 Structure 17:759-768 (2009)
PubMed id: 19446531  
 
 
Structure and Interdomain Interactions of a Hybrid Domain: A Disulphide-Rich Module of the Fibrillin/LTBP Superfamily of Matrix Proteins.
S.A.Jensen, S.Iqbal, E.D.Lowe, C.Redfield, P.A.Handford.
 
  ABSTRACT  
 
The fibrillins and latent transforming growth factor-beta binding proteins (LTBPs) form a superfamily of structurally-related proteins consisting of calcium-binding epidermal growth factor-like (cbEGF) domains interspersed with 8-cysteine-containing transforming growth factor beta-binding protein-like (TB) and hybrid (hyb) domains. Fibrillins are the major components of the extracellular 10-12 nm diameter microfibrils, which mediate a variety of cell-matrix interactions. Here we present the crystal structure of a fibrillin-1 cbEGF9-hyb2-cbEGF10 fragment, solved to 1.8 A resolution. The hybrid domain fold is similar, but not identical, to the TB domain fold seen in previous fibrillin-1 and LTBP-1 fragments. Pairwise interactions with neighboring cbEGF domains demonstrate extensive interfaces, with the hyb2-cbEGF10 interface dependent on Ca(2+) binding. These observations provide accurate constraints for models of fibrillin organization within the 10-12 nm microfibrils and provide further molecular insights into how Ca(2+) binding influences the intermolecular interactions and biomechanical properties of fibrillin-1.
 
  Selected figure(s)  
 
Figure 1.
Figure 1. Domain Organization of Human Fibrillin-1
The fibrillin sequence is largely dominated by cbEGF domains, interspersed with TB and hyb domains. Constructs used to determine Ca^2+ affinities of hyb-cbEGF pairs and the cbEGF9-hyb2-cbEGF10 construct are shown above the figure.
Figure 4.
Figure 4. Residues Involved in the Formation of Interdomain Interfaces
(A and B) Residues involved in interdomain contacts were identified using the program Contact in the CCP4 program suite (CCP4, 1994), with a distance limit of 4 Å. Hyb domain residues at the cbEGF9-hyb2 interface (A) or hyb2-cbEGF10 interface (B) are indicated by magenta spheres and interacting cbEGF residues are indicated by green spheres.
(C) An alignment of the hyb2 and TB4 domains shows similarities of the regions involved in interactions with either the N-terminal (red) or C-terminal (cyan) cbEGFs. Domains were aligned using Clustal W 2.0 (Larkin et al., 2007), and cysteines are highlighted in yellow.
 
  The above figures are reprinted from an Open Access publication published by Cell Press: Structure (2009, 17, 759-768) copyright 2009.  
  Figures were selected by an automated process.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
21175431 I.Robertson, S.Jensen, and P.Handford (2010).
TB domain proteins: evolutionary insights into the multifaceted roles of fibrillins and LTBPs.
  Biochem J, 433, 263-276.  
19446519 D.Hubmacher, and D.P.Reinhardt (2009).
One more piece in the fibrillin puzzle.
  Structure, 17, 635-636.  
19836010 Z.Urban, V.Hucthagowder, N.Schürmann, V.Todorovic, L.Zilberberg, J.Choi, C.Sens, C.W.Brown, R.D.Clark, K.E.Holland, M.Marble, L.Y.Sakai, B.Dabovic, D.B.Rifkin, and E.C.Davis (2009).
Mutations in LTBP4 cause a syndrome of impaired pulmonary, gastrointestinal, genitourinary, musculoskeletal, and dermal development.
  Am J Hum Genet, 85, 593-605.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time.