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Signaling protein PDB-id
1z3s
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Protein chains
216 a.a. *
Metal ions
_CA ×2
Waters ×217

* Residue conservation analysis
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PDB id: 1z3s
Name: Signaling protein
Title: Angiopoietin-2 receptor binding domain

Structure:
Angiopoietin-2. Chain: a, b. Fragment: receptor binding domain (residues 281-496). Synonym: ang-2. Engineered: yes

Source:
Homo sapiens. Human. Organism_taxid: 9606. Expressed in: escherichia coli. Expression_system_taxid: 562

UniProt:
Chains A, B: O15123 (ANGP2_HUMAN)
Pfam   ArchSchema ?
Seq:
Struc:
Seq: 496 a.a.
Struc: 216 a.a.*
Key:    PfamA domain  PfamB domain
 Secondary structure  CATH domain
* PDB and UniProt seqs differ at 1 residue position (black cross)

Resolution:
2.35Å

R-factor:
0.229

R-free:
0.287

Authors:
W.A.Barton,D.Tzvetkova,D.B.Nikolov

Key ref:
W.A.Barton et al. (2005). Structure of the angiopoietin-2 receptor binding domain and identification of surfaces involved in Tie2 recognition.. Structure, 13, 825-832. [PubMed id: 15893672] [DOI: 10.1016/j.str.2005.03.009]

Date:
14-Mar-05

Release date:
12-Jul-05

Related entries:
1z3u
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    Key reference    
 
 
DOI no: 10.1016/j.str.2005.03.009 Structure 13:825-832 (2005)
PubMed id: 15893672  
 
 
Structure of the angiopoietin-2 receptor binding domain and identification of surfaces involved in Tie2 recognition.
W.A.Barton, D.Tzvetkova, D.B.Nikolov.
 
  ABSTRACT  
 
The angiopoietins comprise a small class of secreted glycoproteins that play crucial roles in the maturation and maintenance of the mammalian vascular and lymphatic systems. They exert their effects through a member of the tyrosine kinase receptor family, Tie2. Angiopoietin/Tie2 signaling is unique among tyrosine kinase receptor-ligand systems in that distinct angiopoietin ligands, although highly homologous, can function as agonists or antagonists in a context-dependent manner. In an effort to understand this molecular dichotomy, we have crystallized and determined the 2.4 A crystal structure of the Angiopoietin-2 (Ang2) receptor binding region. The structure reveals a fibrinogen fold with a unique C-terminal P domain. Conservation analysis and structure-based mutagenesis identify a groove on the Ang2 molecular surface that mediates receptor recognition.
 
  Selected figure(s)  
 
Figure 5.
Figure 5. Structure of the F468A/Y474A/Y475A Ang2-RBD Mutant
The structure is (blue) superimposed on the structure of the wild-type protein (red). Mutated residues are shown in yellow ball-and-stick format.
 
  The above figure is reprinted by permission from Cell Press: Structure (2005, 13, 825-832) copyright 2005.  
  Figure was selected by an automated process.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
  19922791 T.M.Hansen, H.Singh, T.A.Tahir, and N.P.Brindle (2010).
Effects of angiopoietins-1 and -2 on the receptor tyrosine kinase Tie2 are differentially regulated at the endothelial cell surface.
  Cell Signal, 22, 527-532.  
17322526 K.B.Pabbisetty, X.Yue, C.Li, J.P.Himanen, R.Zhou, D.B.Nikolov, and L.Hu (2007).
Kinetic analysis of the binding of monomeric and dimeric ephrins to Eph receptors: correlation to function in a growth cone collapse assay.
  Protein Sci, 16, 355-361.  
17148457 M.Tanio, S.Kondo, S.Sugio, and T.Kohno (2007).
Trivalent recognition unit of innate immunity system: crystal structure of trimeric human M-ficolin fibrinogen-like domain.
  J Biol Chem, 282, 3889-3895.
PDB code: 2d39
  16820685 M.Tanio, S.Kondo, S.Sugio, and T.Kohno (2006).
Overexpression, purification and preliminary crystallographic analysis of human M-ficolin fibrinogen-like domain.
  Acta Crystallogr Sect F Struct Biol Cryst Commun, 62, 652-655.  
16645151 N.P.Brindle, P.Saharinen, and K.Alitalo (2006).
Signaling and functions of angiopoietin-1 in vascular protection.
  Circ Res, 98, 1014-1023.  
16732286 W.A.Barton, D.Tzvetkova-Robev, E.P.Miranda, M.V.Kolev, K.R.Rajashankar, J.P.Himanen, and D.B.Nikolov (2006).
Crystal structures of the Tie2 receptor ectodomain and the angiopoietin-2-Tie2 complex.
  Nat Struct Mol Biol, 13, 524-532.
PDB codes: 2gy5 2gy7
16379598 S.G.Rockson (2005).
Literature watch. A genetic Xenopus laevis tadpole model to study lymphangiogenesis.
  Lymphat Res Biol, 3, 263-267.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.