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protein links
Ligase PDB id
1yrv
Jmol
Contents
Protein chain
153 a.a. *
Waters ×76
* Residue conservation analysis
PDB id:
1yrv
Name: Ligase
Title: Novel ubiquitin-conjugating enzyme
Structure: Ubiquitin-conjugating ligase mgc351130. Chain: a. Fragment: residues 1-150. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: mgc35130. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008. Other_details: the n-terminal cloning tag mgsshhhhhhssglvprgs has not been removed from the protein
Biol. unit: Tetramer (from PQS)
Resolution:
2.18Å     R-factor:   0.244     R-free:   0.294
Authors: J.R.Walker,J.Choe,G.V.Avvakumov,E.M.Newman,F.Mackenzie, M.Sundstrom,C.Arrowsmith,A.Edwards,A.Bochkarev,S.Dhe- Paganon,Structural Genomics Consortium (Sgc)
Key ref: J.R.Walker et al. Novel ubiquitin-Conjugating enzyme. To be published,
Date:
04-Feb-05     Release date:   22-Mar-05    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q5VVX9  (UBE2U_HUMAN) -  Ubiquitin-conjugating enzyme E2 U
Seq:
Struc:
321 a.a.
153 a.a.
Key:    PfamA domain  PfamB domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.6.3.2.19  - Ubiquitin--protein ligase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine
ATP
+ ubiquitin
+ protein lysine
= AMP
+ diphosphate
+ protein N-ubiquityllysine
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Biological process     regulation of protein metabolic process   2 terms 
  Biochemical function     small conjugating protein ligase activity     1 term