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Structural genomics, unknown function
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PDB id
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1wv9
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* Residue conservation analysis
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PDB id:
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Structural genomics, unknown function
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Title:
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Crystal structure of rhodanese homolog tt1651 from an extremely thermophilic bacterium thermus thermophilus hb8
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Structure:
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Rhodanese homolog tt1651. Chain: a, b. Synonym: hypothetical protein ttha0613. Engineered: yes
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Source:
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Thermus thermophilus. Organism_taxid: 274. Expressed in: escherichia coli. Expression_system_taxid: 562.
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Resolution:
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2.00Å
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R-factor:
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0.215
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R-free:
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0.258
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Authors:
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E.Mizohata,M.Hattori,A.Tatsuguchi,T.Terada,S.Kuramitsu, M.Shirouzu,S.Yokoyama,Riken Structural Genomics/proteomics Initiative (Rsgi)
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Key ref:
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M.Hattori
et al.
(2006).
Crystal structure of the single-domain rhodanese homologue TTHA0613 from Thermus thermophilus HB8.
Proteins,
64,
284-287.
PubMed id:
DOI:
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Date:
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12-Dec-04
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Release date:
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19-Jun-05
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PROCHECK
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Headers
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References
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DOI no:
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Proteins
64:284-287
(2006)
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PubMed id:
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Crystal structure of the single-domain rhodanese homologue TTHA0613 from Thermus thermophilus HB8.
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M.Hattori,
E.Mizohata,
A.Tatsuguchi,
R.Shibata,
S.Kishishita,
K.Murayama,
T.Terada,
S.Kuramitsu,
M.Shirouzu,
S.Yokoyama.
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ABSTRACT
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Selected figure(s)
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Figure 1.
Figure 1. (A). Crystal packing of the molecules in the
asymmetric unit. Molecules A and B are colored pink and blue,
respectively. (B) Ribbon representation of the TTHA0613 monomer
(stereo view). The  -helices
and  -strands
are colored red and green, respectively. The figure was
generated with the graphics program CueMol
(http://cuemol.sourceforge.jp/en/). (C) Structure-based sequence
alignment of TTHA0613 and rhodanese homology domains. (D)
Sequence comparison between TTHA0613 and its six closest
homologs, which each have a single rhodanese homology domain.
The figure was constructed by PSI-BLAST^1 followed by
CLUSTALW.[18] Ll, Lactococcus lactis subsp; Aa, Arthrobacter
aurescens; Tt, Thermus thermophilus; Lp, Legionella pneumophila
subs; Ss, Streptococcus suis; Ps, Pseudomonas syringae. Strictly
conserved and similar residues are represented within a red box
and by a red letter, respectively.
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The above figure is
reprinted
by permission from John Wiley & Sons, Inc.:
Proteins
(2006,
64,
284-287)
copyright 2006.
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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D.M.Standley,
H.Toh,
and
H.Nakamura
(2008).
Functional annotation by sequence-weighted structure alignments: statistical analysis and case studies from the Protein 3000 structural genomics project in Japan.
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Proteins, 72,
1333-1351.
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M.C.Giuliani,
P.Tron,
G.Leroy,
C.Aubert,
P.Tauc,
and
M.T.Giudici-Orticoni
(2007).
A new sulfurtransferase from the hyperthermophilic bacterium Aquifex aeolicus. Being single is not so simple when temperature gets high.
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FEBS J, 274,
4572-4587.
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X.Tao,
and
L.Tong
(2007).
Crystal structure of the MAP kinase binding domain and the catalytic domain of human MKP5.
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Protein Sci, 16,
880-886.
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PDB codes:
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
codes are
shown on the right.
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Links
