PDBsum entry: 1whb

Hydrolase

PDB-id: 1whb

Contents

Description

Header details

Header records

References

PROCHECK

Protein chain

157 a.a. *

* Residue conservation analysis

Tools

Clefts Calculation

PDB id:

1whb

Name:

Hydrolase

Title:

Solution structure of the rhodanese-like domain in human ubiquitin specific protease 8 (ubp8)

Structure:

Kiaa0055. Chain: a. Fragment: rhodanese-like domain. Synonym: ubiquitin specific protease 8, ubp8. Engineered: yes

Source:

Homo sapiens. Human. Organism_taxid: 9606. Gene: kazusa cdna ha01049. Other_details: cell-free protein synthesis

UniProt:

P40818 (UBP8_HUMAN)

Seq:

Struc:

Seq:

Struc:

Seq:

Struc:

Seq:

Struc:

Seq:

1118 a.a.

Struc:

157 a.a.*

Key:	PfamA domain
Secondary structure	CATH domain

* PDB and UniProt seqs differ at 10 residue positions (black crosses)

Enzyme class:

E.C.3.1.2.15   [IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

Reaction:

Ubiquitin C-terminal thioester + H₂O = ubiquitin + a thiol (see diagram below)

Resolution:

not givenÅ

NMR structure:

20 models

Authors:

K.Saito,S.Koshiba,M.Inoue,T.Kigawa,S.Yokoyama,Riken Structural Genomics/proteomics Initiative (Rsgi)

Key ref:

k.saito et al. solution structure of the rhodanese-like domain in human ubiquitin specific protease 8 (ubp8). TO BE PUBLISHED, .

Date:

28-May-04

Release date:

28-Nov-04

Related entries:

Hsk002000052.1 related db: targetdb

Quick_links

Procheck

Clefts

Surface