PDBsum entry: 1tg2

Oxidoreductase

PDB id: 1tg2

Contents

Protein chain

308 a.a. *

Ligands

H2B

Metals

_FE

Waters ×73

* Residue conservation analysis

PDB id:

1tg2

Name:

Oxidoreductase

Title:

Crystal structure of phenylalanine hydroxylase a313t mutant with 7,8-dihydrobiopterin bound

Structure:

Phenylalanine-4-hydroxylase. Chain: a. Fragment: delta nh 1-102-delta cooh 428 human phenylalanine hydroxylase. Synonym: pah, phe-4- monooxygenase. Engineered: yes. Mutation: yes

Source:

Homo sapiens. Human. Organism_taxid: 9606. Gene: pah. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.

Resolution:

2.20Å R-factor: 0.213 R-free: 0.254

Authors:

H.Erlandsen,A.L.Pey,A.Gamez,B.Perez,L.R.Desviat,C.Aguado, R.Koch,S.Surendran,S.Tyring,R.Matalon,C.R.Scriver,M.Ugarte, A.Martinez,R.C.Stevens

Key ref:

H.Erlandsen et al. (2004). Correction of kinetic and stability defects by tetrahydrobiopterin in phenylketonuria patients with certain phenylalanine hydroxylase mutations. Proc Natl Acad Sci U S A, 101, 16903-16908. PubMed id: 15557004 DOI: 10.1073/pnas.0407256101

Date:

28-May-04 Release date: 30-Nov-04

Protein chain

P00439  (PH4H_HUMAN) -  Phenylalanine-4-hydroxylase

Seq: 452 a.a.

Struc: 308 a.a.*

* PDB and UniProt seqs differ at 1 residue position (black cross)

Enzyme reactions

• Enzyme class: E.C.1.14.16.1 - Phenylalanine 4-monooxygenase.
• Pathway: Phenylalanine and Tyrosine Biosynthesis
• Reaction: L-phenylalanine + tetrahydrobiopterin + O₂ = L-tyrosine + 4a-hydroxytetrahydrobiopterin

L-phenylalanine + tetrahydrobiopterin (Bound ligand (Het Group name = H2B) corresponds exactly) + O(2) = L-tyrosine + 4a-hydroxytetrahydrobiopterin

• Cofactor: Iron

Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 Gene Ontology (GO) functional annotation 

• Biological process: oxidation reduction (2 terms)
• Biochemical function: monooxygenase activity (3 terms)

reference

DOI no: 10.1073/pnas.0407256101

Proc Natl Acad Sci U S A 101:16903-16908 (2004)

PubMed id: 15557004

Correction of kinetic and stability defects by tetrahydrobiopterin in phenylketonuria patients with certain phenylalanine hydroxylase mutations.

H.Erlandsen, A.L.Pey, A.Gámez, B.Pérez, L.R.Desviat, C.Aguado, R.Koch, S.Surendran, S.Tyring, R.Matalon, C.R.Scriver, M.Ugarte, A.Martínez, R.C.Stevens.

ABSTRACT

Phenylketonuria patients harboring a subset of phenylalanine hydroxylase (PAH) mutations have recently shown normalization of blood phenylalanine levels upon oral administration of the PAH cofactor tetrahydrobiopterin [(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4)]. Several hypotheses have been put forward to explain BH4 responsiveness, but the molecular basis for the corrective effect(s) of BH4 has not been understood. We have investigated the biochemical, kinetic, and structural changes associated with BH4-responsive mutations (F39L, I65T, R68S, H170D, E178G, V190A, R261Q, A300S, L308F, A313T, A373T, V388M, E390G, P407S, and Y414C). The biochemical and kinetic characterization of the 15 mutants studied points toward a multifactorial basis for the BH4 responsiveness; the mutants show residual activity (>30% of WT) and display various kinetic defects, including increased Km (BH4) and reduced cooperativity of substrate binding, but no decoupling of cofactor (BH4) oxidation. For some, BH4 seems to function through stabilization and protection of the enzyme from inactivation and proteolytic degradation. In the crystal structures of a phenylketonuria mutant, A313T, minor changes were seen when compared with the WT PAH structures, consistent with the mild effects the mutant has upon activity of the enzyme both in vitro and in vivo. Truncations made in the A313T mutant PAH form revealed that the N and C termini of the enzyme influence active site binding. Of fundamental importance is the observation that BH4 appears to increase Phe catabolism if at least one of the two heterozygous mutations has any residual activity remaining.

Selected figure(s)

Figure 1.
Fig. 1. PAH mutations covered in this work mapped onto the monomer of a composite model of full-length PAH. Orange represents the regulatory domain (1-142), gray represents the catalytic domain (143-410), and blue represents the oligomerization domain (411-452). The iron at the active site is displayed as a yellow sphere, whereas the tetrahydrobiopterin (BH[4]), thienylalanine (TIH) substrate analog, and protein side chains are colored by individual atom colors (green is carbon, blue is nitrogen, red is oxygen, and yellow is sulfur). The purple regions are considered the pterin-binding regions.

Figure 2.
Fig. 2. (A) Ala-313 environment in wt-PAH composite full-length model. (B) Thr-313 environment in the A313T-dt-PAH·7,8-BH[2] structure. The color scheme is as in Fig. 1.