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Viral protein PDB id
1qrj
Jmol
Contents
Protein chains
15 a.a.
199 a.a. *
* Residue conservation analysis
PDB id:
1qrj
Name: Viral protein
Title: Solution structure of htlv-i capsid protein
Structure: His tag. Chain: a. Engineered: yes. Htlv-i capsid protein. Chain: b. Engineered: yes
Source: Human t-cell lymphotrophic virus type 1 (strain atk). Organism_taxid: 11926. Strain: atk. Gene: gag. Expressed in: homo sapiens. Expression_system_taxid: 9606. Expression_system_cell_line: hms174(de3). Expression_system_cell: t-cell.
NMR struc: 1 models
Authors: S.Khorasanizadeh,R.Campos-Olivas,C.A.Clark,M.F.Summers
Key ref: S.Khorasanizadeh et al. (1999). Sequence-specific 1H, 13C and 15N chemical shift assignment and secondary structure of the HTLV-I capsid protein. J Biomol NMR, 14, 199-200. PubMed id: 10427751 DOI: 10.1023/A:1008307507462
Date:
14-Jun-99     Release date:   13-Jul-99    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P03345  (GAG_HTL1A) -  Gag polyprotein
Seq:
Struc: 		429 a.a.
15 a.a.*
Protein chain
No UniProt id for this chain
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 11 residue positions (black crosses)

 Gene Ontology (GO) functional annotation 
  GO annot!
  Biological process     viral reproduction   1 term 

 

 
DOI no: 10.1023/A:1008307507462 J Biomol NMR 14:199-200 (1999)
PubMed id: 10427751  
 
 
Sequence-specific 1H, 13C and 15N chemical shift assignment and secondary structure of the HTLV-I capsid protein.
S.Khorasanizadeh, R.Campos-Olivas, C.A.Clark, M.F.Summers.
 
  ABSTRACT  
 
No abstract given.

 

Literature references that cite this PDB file's key reference

  PubMed id Reference
  20825647 K.Kono, H.Song, M.Yokoyama, H.Sato, T.Shioda, and E.E.Nakayama (2010).
Multiple sites in the N-terminal half of simian immunodeficiency virus capsid protein contribute to evasion from rhesus monkey TRIM5α-mediated restriction.
  Retrovirology, 7, 72.  
15367628 J.L.Spidel, R.C.Craven, C.B.Wilson, A.Patnaik, H.Wang, L.M.Mansky, and J.W.Wills (2004).
Lysines close to the Rous sarcoma virus late domain critical for budding.
  J Virol, 78, 10606-10616.  
14715087 W.R.Taylor, and J.P.Stoye (2004).
Consensus structural models for the amino terminal domain of the retrovirus restriction gene Fv1 and the murine leukaemia virus capsid proteins.
  BMC Struct Biol, 4, 1.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time.