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Kinase inhibitor/peptide
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PDB id
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1qjb
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* Residue conservation analysis
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PDB id:
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| Name: |
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Kinase inhibitor/peptide
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Title:
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14-3-3 zeta/phosphopeptide complex (mode 1)
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Structure:
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14-3-3 protein zeta/delta. Chain: a, b. Engineered: yes. Biological_unit: dimer. Phosphopeptide. Chain: s, q
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Source:
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Homo sapiens. Human. Organism_taxid: 9606. Expressed in: escherichia coli. Expression_system_taxid: 562. Synthetic: yes. Organism_taxid: 9606
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Biol. unit:
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Dimer (from PDB file)
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Resolution:
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2.0Å
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R-factor:
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0.210
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R-free:
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0.288
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Authors:
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K.Rittinger,J.Budman,J.Xu,S.Volinia,L.C.Cantley,S.J.Smerdon, S.J.Gamblin,M.B.Yaffe
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Key ref:
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K.Rittinger
et al.
(1999).
Structural analysis of 14-3-3 phosphopeptide complexes identifies a dual role for the nuclear export signal of 14-3-3 in ligand binding.
Mol Cell,
4,
153-166.
PubMed id:
DOI:
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Date:
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23-Jun-99
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Release date:
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15-Sep-99
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Supersedes:
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PROCHECK
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Headers
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References
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P63104
(1433Z_HUMAN) -
14-3-3 protein zeta/delta
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Seq: Struc:
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245 a.a.
228 a.a.
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Key: |
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PfamA domain |
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Secondary structure |
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CATH domain |
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Gene Ontology (GO) functional annotation
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Cellular component
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protein complex
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11 terms
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Biological process
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response to drug
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10 terms
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Biochemical function
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protein binding
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3 terms
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DOI no:
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Mol Cell
4:153-166
(1999)
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PubMed id:
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Structural analysis of 14-3-3 phosphopeptide complexes identifies a dual role for the nuclear export signal of 14-3-3 in ligand binding.
|
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K.Rittinger,
J.Budman,
J.Xu,
S.Volinia,
L.C.Cantley,
S.J.Smerdon,
S.J.Gamblin,
M.B.Yaffe.
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ABSTRACT
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We have solved the high-resolution X-ray structure of 14-3-3 bound to two
different phosphoserine peptides, representing alternative substrate-binding
motifs. These structures reveal an evolutionarily conserved network of
peptide-protein interactions within all 14-3-3 isotypes, explain both binding
motifs, and identify a novel intrachain phosphorylation-mediated loop structure
in one of the peptides. A 14-3-3 mutation disrupting Raf signaling alters the
ligand-binding cleft, selecting a different phosphopeptide-binding motif and
different substrates than the wild-type protein. Many 14-3-3: peptide contacts
involve a C-terminal amphipathic alpha helix containing a putative nuclear
export signal, implicating this segment in both ligand and Crm1 binding.
Structural homology between the 14-3-3 NES structure and those within I kappa B
alpha and p53 reveals a conserved topology recognized by the Crm1 nuclear export
machinery.
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Selected figure(s)
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Figure 1.
Figure 1. Structure of a 14-3-3:Mode-2 Peptide Complex(A)
An end-on view of 14-3-3 bound to the phosphoserine peptide
RLYHpSLP (stick representation shown with carbons colored
yellow, nitrogens blue, oxygens red, and phosphate green).
Residues whose side chains form the phosphoserine-binding pocket
lie within helices αC and αE (white) whereas 14-3-3 side
chains that interact with the remainder of the peptide arise
from helices αG (magenta) and αI (blue).(B) A stereo view of
the peptide-binding pocket. The view is within the center of the
14-3-3 dimer, rotated 90° to the view in (A), and with the
same color scheme. 14-3-3 side chains contributing to peptide
binding are shown. Note in particular the large contribution of
residues from helix αI extending into the peptide-binding
groove.(C) Full atom representation of the m1 and m2
phosphopeptides with (F[o] − F[c]) omit electron density maps,
contoured at 2σ superimposed. The back bonding between the
guanidino group of the pSer −4 Arg residue and the Ser
phosphate in the m2 structure is evident, along with the
trans-conformation of the Pro residue in the pSer +2
position.(D) An extensive interface between 14-3-3 and bound
phosphopeptide. The view is in the same orientation as in (B)
with the mode 2 peptide rotated out of the binding cleft.
Regions on the peptide and 14-3-3 molecular surfaces lying <3
Å apart are shaded red. The interface between 14-3-3 and
the mode 1 phosphopeptide (not shown) is nearly identical.
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Figure 3.
Figure 3. Details of the 14-3-3 Protein:Phosphoserine
Peptide Interactions Illustrating Specific Interresidue
ContactsColor coding is as described in Figure 1.
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The above figures are
reprinted
by permission from Cell Press:
Mol Cell
(1999,
4,
153-166)
copyright 1999.
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Figures were
selected
by an automated process.
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Literature references that cite this PDB file's key reference
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PubMed id
|
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Reference
|
 |
|
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|
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A.H.Benkovics,
T.Nyikó,
Z.Mérai,
D.Silhavy,
and
G.D.Bisztray
(2011).
Functional analysis of the grapevine paralogs of the SMG7 NMD factor using a heterolog VIGS-based gene depletion-complementation system.
|
| |
Plant Mol Biol, 75,
277-290.
|
 |
|
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|
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G.Messaritou,
S.Grammenoudi,
and
E.M.Skoulakis
(2010).
Dimerization is essential for 14-3-3zeta stability and function in vivo.
|
| |
J Biol Chem, 285,
1692-1700.
|
 |
|
|
|
|
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K.Weigand,
A.Knaust,
and
H.Schaller
(2010).
Assembly and export determine the intracellular distribution of hepatitis B virus core protein subunits.
|
| |
J Gen Virol, 91,
59-67.
|
 |
|
|
|
|
 |
L.Yasmin,
J.L.Veesenmeyer,
M.H.Diaz,
M.S.Francis,
C.Ottmann,
R.H.Palmer,
A.R.Hauser,
and
B.Hallberg
(2010).
Electrostatic interactions play a minor role in the binding of ExoS to 14-3-3 proteins.
|
| |
Biochem J, 427,
217-224.
|
 |
|
|
|
|
 |
M.E.Douglas,
T.Davies,
N.Joseph,
and
M.Mishima
(2010).
Aurora B and 14-3-3 coordinately regulate clustering of centralspindlin during cytokinesis.
|
| |
Curr Biol, 20,
927-933.
|
 |
|
|
|
|
 |
R.S.Agnes,
F.Jernigan,
J.R.Shell,
V.Sharma,
and
D.S.Lawrence
(2010).
Suborganelle sensing of mitochondrial cAMP-dependent protein kinase activity.
|
| |
J Am Chem Soc, 132,
6075-6080.
|
 |
|
|
|
|
 |
S.Rajagopalan,
R.S.Sade,
F.M.Townsley,
and
A.R.Fersht
(2010).
Mechanistic differences in the transcriptional activation of p53 by 14-3-3 isoforms.
|
| |
Nucleic Acids Res, 38,
893-906.
|
 |
|
|
|
|
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B.Kostelecky,
A.T.Saurin,
A.Purkiss,
P.J.Parker,
and
N.Q.McDonald
(2009).
Recognition of an intra-chain tandem 14-3-3 binding site within PKCepsilon.
|
| |
EMBO Rep, 10,
983-989.
|
 |
|
PDB code:
|
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|
|
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C.Choudhary,
C.Kumar,
F.Gnad,
M.L.Nielsen,
M.Rehman,
T.C.Walther,
J.V.Olsen,
and
M.Mann
(2009).
Lysine acetylation targets protein complexes and co-regulates major cellular functions.
|
| |
Science, 325,
834-840.
|
 |
|
|
|
|
 |
D.Chevalier,
E.R.Morris,
and
J.C.Walker
(2009).
14-3-3 and FHA domains mediate phosphoprotein interactions.
|
| |
Annu Rev Plant Biol, 60,
67-91.
|
 |
|
|
|
|
 |
E.F.Barry,
F.A.Felquer,
J.A.Powell,
L.Biggs,
F.C.Stomski,
A.Urbani,
H.Ramshaw,
P.Hoffmann,
M.C.Wilce,
M.A.Grimbaldeston,
A.F.Lopez,
and
M.A.Guthridge
(2009).
14-3-3:shc scaffolds integrate phosphoserine and phosphotyrosine signaling to regulate phosphatidylinositol 3-kinase activation and cell survival.
|
| |
J Biol Chem, 284,
12080-12090.
|
 |
|
|
|
|
 |
G.M.Bokoch,
B.Diebold,
J.S.Kim,
and
D.Gianni
(2009).
Emerging evidence for the importance of phosphorylation in the regulation of NADPH oxidases.
|
| |
Antioxid Redox Signal, 11,
2429-2441.
|
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|
|
|
|
 |
J.Silhan,
P.Vacha,
P.Strnadova,
J.Vecer,
P.Herman,
M.Sulc,
J.Teisinger,
V.Obsilova,
and
T.Obsil
(2009).
14-3-3 Protein Masks the DNA Binding Interface of Forkhead Transcription Factor FOXO4.
|
| |
J Biol Chem, 284,
19349-19360.
|
 |
|
|
|
|
 |
L.K.Nutt,
M.R.Buchakjian,
E.Gan,
R.Darbandi,
S.Y.Yoon,
J.Q.Wu,
Y.J.Miyamoto,
J.A.Gibbons,
J.A.Gibbon,
J.L.Andersen,
C.D.Freel,
W.Tang,
C.He,
M.Kurokawa,
Y.Wang,
S.S.Margolis,
R.A.Fissore,
and
S.Kornbluth
(2009).
Metabolic control of oocyte apoptosis mediated by 14-3-3zeta-regulated dephosphorylation of caspase-2.
|
| |
Dev Cell, 16,
856-866.
|
 |
|
|
|
|
 |
M.Lin,
C.D.Morrison,
S.Jones,
N.Mohamed,
J.Bacher,
and
C.Plass
(2009).
Copy number gain and oncogenic activity of YWHAZ/14-3-3zeta in head and neck squamous cell carcinoma.
|
| |
Int J Cancer, 125,
603-611.
|
 |
|
|
|
|
 |
N.Flamand,
M.Luo,
M.Peters-Golden,
and
T.G.Brock
(2009).
Phosphorylation of serine 271 on 5-lipoxygenase and its role in nuclear export.
|
| |
J Biol Chem, 284,
306-313.
|
 |
|
|
|
|
 |
S.Sun,
E.W.Wong,
M.W.Li,
W.M.Lee,
and
C.Y.Cheng
(2009).
14-3-3 and its binding partners are regulators of protein-protein interactions during spermatogenesis.
|
| |
J Endocrinol, 202,
327-336.
|
 |
|
|
|
|
 |
U.H.Saxena,
C.M.Powell,
J.K.Fecko,
R.Cacioppo,
H.S.Chou,
G.M.Cooper,
and
U.Hansen
(2009).
Phosphorylation by cyclin C/cyclin-dependent kinase 2 following mitogenic stimulation of murine fibroblasts inhibits transcriptional activity of LSF during G1 progression.
|
| |
Mol Cell Biol, 29,
2335-2345.
|
 |
|
|
|
|
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Z.Li,
J.Y.Liu,
and
J.T.Zhang
(2009).
14-3-3sigma, the double-edged sword of human cancers.
|
| |
Am J Transl Res, 1,
326-340.
|
 |
|
|
|
|
 |
A.J.VanMeter,
A.S.Rodriguez,
E.D.Bowman,
J.Jen,
C.C.Harris,
J.Deng,
V.S.Calvert,
A.Silvestri,
C.Fredolini,
V.Chandhoke,
E.F.Petricoin,
L.A.Liotta,
and
V.Espina
(2008).
Laser capture microdissection and protein microarray analysis of human non-small cell lung cancer: differential epidermal growth factor receptor (EGPR) phosphorylation events associated with mutated EGFR compared with wild type.
|
| |
Mol Cell Proteomics, 7,
1902-1924.
|
 |
|
|
|
|
 |
C.J.Oldfield,
J.Meng,
J.Y.Yang,
M.Q.Yang,
V.N.Uversky,
and
A.K.Dunker
(2008).
Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners.
|
| |
BMC Genomics, 9,
S1.
|
 |
|
|
|
|
 |
D.M.Gwinn,
D.B.Shackelford,
D.F.Egan,
M.M.Mihaylova,
A.Mery,
D.S.Vasquez,
B.E.Turk,
and
R.J.Shaw
(2008).
AMPK phosphorylation of raptor mediates a metabolic checkpoint.
|
| |
Mol Cell, 30,
214-226.
|
 |
|
|
|
|
 |
I.E.Sánchez,
P.Beltrao,
F.Stricher,
J.Schymkowitz,
J.Ferkinghoff-Borg,
F.Rousseau,
and
L.Serrano
(2008).
Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm.
|
| |
PLoS Comput Biol, 4,
e1000052.
|
 |
|
|
|
|
 |
L.Demmel,
M.Beck,
C.Klose,
A.L.Schlaitz,
Y.Gloor,
P.P.Hsu,
J.Havlis,
A.Shevchenko,
E.Krause,
Y.Kalaidzidis,
and
C.Walch-Solimena
(2008).
Nucleocytoplasmic shuttling of the Golgi phosphatidylinositol 4-kinase pik1 is regulated by 14-3-3 proteins and coordinates Golgi function with cell growth.
|
| |
Mol Biol Cell, 19,
1046-1061.
|
 |
|
|
|
|
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M.E.Grespin,
G.M.Bonamy,
V.R.Roggero,
N.G.Cameron,
L.E.Adam,
A.P.Atchison,
V.M.Fratto,
and
L.A.Allison
(2008).
Thyroid hormone receptor alpha1 follows a cooperative CRM1/calreticulin-mediated nuclear export pathway.
|
| |
J Biol Chem, 283,
25576-25588.
|
 |
|
|
|
|
 |
M.Jinek,
A.Eulalio,
A.Lingel,
S.Helms,
E.Conti,
and
E.Izaurralde
(2008).
The C-terminal region of Ge-1 presents conserved structural features required for P-body localization.
|
| |
RNA, 14,
1991-1998.
|
 |
|
PDB code:
|
 |
|
|
|
|
|
 |
P.Puri,
K.Myers,
D.Kline,
and
S.Vijayaraghavan
(2008).
Proteomic analysis of bovine sperm YWHA binding partners identify proteins involved in signaling and metabolism.
|
| |
Biol Reprod, 79,
1183-1191.
|
 |
|
|
|
|
 |
S.Rajagopalan,
A.M.Jaulent,
M.Wells,
D.B.Veprintsev,
and
A.R.Fersht
(2008).
14-3-3 activation of DNA binding of p53 by enhancing its association into tetramers.
|
| |
Nucleic Acids Res, 36,
5983-5991.
|
 |
|
|
|
|
 |
T.Obsil,
and
V.Obsilova
(2008).
Structure/function relationships underlying regulation of FOXO transcription factors.
|
| |
Oncogene, 27,
2263-2275.
|
 |
|
|
|
|
 |
B.Luke,
C.M.Azzalin,
N.Hug,
A.Deplazes,
M.Peter,
and
J.Lingner
(2007).
Saccharomyces cerevisiae Ebs1p is a putative ortholog of human Smg7 and promotes nonsense-mediated mRNA decay.
|
| |
Nucleic Acids Res, 35,
7688-7697.
|
 |
|
|
|
|
 |
B.Pauly,
M.Lasi,
C.MacKintosh,
N.Morrice,
A.Imhof,
J.Regula,
S.Rudd,
C.N.David,
and
A.Böttger
(2007).
Proteomic screen in the simple metazoan Hydra identifies 14-3-3 binding proteins implicated in cellular metabolism, cytoskeletal organisation and Ca2+ signalling.
|
| |
BMC Cell Biol, 8,
31.
|
 |
|
|
|
|
 |
C.Ottmann,
L.Yasmin,
M.Weyand,
J.L.Veesenmeyer,
M.H.Diaz,
R.H.Palmer,
M.S.Francis,
A.R.Hauser,
A.Wittinghofer,
and
B.Hallberg
(2007).
Phosphorylation-independent interaction between 14-3-3 and exoenzyme S: from structure to pathogenesis.
|
| |
EMBO J, 26,
902-913.
|
 |
|
PDB code:
|
 |
|
|
|
|
|
 |
F.L.Aachmann,
D.E.Fomenko,
A.Soragni,
V.N.Gladyshev,
and
A.Dikiy
(2007).
Solution structure of selenoprotein w and NMR analysis of its interaction with 14-3-3 proteins.
|
| |
J Biol Chem, 282,
37036-37044.
|
 |
|
PDB code:
|
 |
|
|
|
|
|
 |
J.Rong,
S.Li,
G.Sheng,
M.Wu,
B.Coblitz,
M.Li,
H.Fu,
and
X.J.Li
(2007).
14-3-3 protein interacts with Huntingtin-associated protein 1 and regulates its trafficking.
|
| |
J Biol Chem, 282,
4748-4756.
|
 |
|
|
|
|
 |
J.S.Kim,
B.A.Diebold,
B.M.Babior,
U.G.Knaus,
and
G.M.Bokoch
(2007).
Regulation of Nox1 activity via protein kinase A-mediated phosphorylation of NoxA1 and 14-3-3 binding.
|
| |
J Biol Chem, 282,
34787-34800.
|
 |
|
|
|
|
 |
J.von Blume,
U.Knippschild,
F.Dequiedt,
G.Giamas,
A.Beck,
A.Auer,
J.Van Lint,
G.Adler,
and
T.Seufferlein
(2007).
Phosphorylation at Ser244 by CK1 determines nuclear localization and substrate targeting of PKD2.
|
| |
EMBO J, 26,
4619-4633.
|
 |
|
|
|
|
 |
M.Lee,
and
H.S.Yoo
(2007).
Human Raf-1 proteins associate with Rad24 and Cdc25 in cell-cycle checkpoint pathway of fission yeast, Schizosaccharomyces pombe.
|
| |
J Cell Biochem, 101,
488-497.
|
 |
|
|
|
|
 |
O.Golubnitschaja
(2007).
Cell cycle checkpoints: the role and evaluation for early diagnosis of senescence, cardiovascular, cancer, and neurodegenerative diseases.
|
| |
Amino Acids, 32,
359-371.
|
 |
|
|
|
|
 |
P.Radivojac,
L.M.Iakoucheva,
C.J.Oldfield,
Z.Obradovic,
V.N.Uversky,
and
A.K.Dunker
(2007).
Intrinsic disorder and functional proteomics.
|
| |
Biophys J, 92,
1439-1456.
|
 |
|
|
|
|
 |
S.S.Gouraud,
S.T.Yao,
K.J.Heesom,
J.F.Paton,
and
D.Murphy
(2007).
14-3-3 proteins within the hypothalamic-neurohypophyseal system of the osmotically stressed rat: transcriptomic and proteomic studies.
|
| |
J Neuroendocrinol, 19,
913-922.
|
 |
|
|
|
|
 |
T.Nilsen,
K.R.Rosendal,
V.Sørensen,
J.Wesche,
S.Olsnes,
and
A.Wiedłocha
(2007).
A nuclear export sequence located on a beta-strand in fibroblast growth factor-1.
|
| |
J Biol Chem, 282,
26245-26256.
|
 |
|
|
|
|
 |
T.Usui,
and
J.H.Petrini
(2007).
The Saccharomyces cerevisiae 14-3-3 proteins Bmh1 and Bmh2 directly influence the DNA damage-dependent functions of Rad53.
|
| |
Proc Natl Acad Sci U S A, 104,
2797-2802.
|
 |
|
|
|
|
 |
Y.Honma,
and
M.Akimoto
(2007).
Therapeutic strategy using phenotypic modulation of cancer cells by differentiation-inducing agents.
|
| |
Cancer Sci, 98,
1643-1651.
|
 |
|
|
|
|
 |
A.Aitken
(2006).
14-3-3 proteins: a historic overview.
|
| |
Semin Cancer Biol, 16,
162-172.
|
 |
|
|
|
|
 |
A.H.Milton,
N.Khaire,
L.Ingram,
A.J.O'Donnell,
and
N.B.La Thangue
(2006).
14-3-3 proteins integrate E2F activity with the DNA damage response.
|
| |
EMBO J, 25,
1046-1057.
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PDB codes:
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PDB code:
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only a partial list as not all journals are covered by
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so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
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shown on the right.
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